PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125051.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GRAS
Protein Properties Length: 620aa    MW: 71638.4 Da    PI: 6.6886
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125051.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.92.1e-1072436172373
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     ++lL++cA+a+s+gd++ a  lL ++++ +sp gd+ qRla++f++AL+arl + ++ +    ++ ++ +++ s+ l+a++++   sP++++ ++
  XP_009125051.1 243 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPMGDASQRLAHCFANALEARLRG-SPVIQTYYNAITSLKETASDILKAYRVYLSSSPFVTLMYF 336
                     689**************************************************9.444444446666666679********************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                        ++Il+a++ +e +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g   +e++eetg+rLa+++++++vpfe+++++++++e++
  XP_009125051.1 337 FSFRMILDAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCKRFNVPFEYKAIASQHWESI 431
                     ********************************************************9*****************************9999***** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +l+e++++pgE+laVn  l+l++l de++  e  +rd+vLkl+++++P+v+v++  + + n++ F  rf ea+++y alfd+++++lpr+++eri
  XP_009125051.1 432 RLDEFNIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALFDMFDSTLPRDNQERI 526
                     *****************************999999************************************************************ PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                       Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++  +  l+k    + + v+e+s++l++gWk+r+L++ S+W
  XP_009125051.1 527 RFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYASSCW 617
                     ***********************************************************9998999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.008216597IPR005202Transcription factor GRAS
PfamPF035147.2E-105243617IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MDPNLSLNLN AFEYLDESLF LDSSPSFDFD RNPSFLADPT EEPDENDSST TLLRYVTQIL  60
MEESAGDKQS MFYDSLALRK TEEMLQQVIT DSKAHSATSG SIGSSSSSWS SSVPVHEIVV  120
RSMFSDAESD LQFRRGLEEA RKFLPNSDQW VFNLEKPAVR EVIKEERVKK SHQREVLDLE  180
EQVRSSKQSA TNVEDVEVTD MFDKVLLLDG QCDPQTLSSQ ETMSNKKKKK KKKKKKSQVI  240
DFRTLLTHCA QAISTGDKTT ALDLLLQIRQ DSSPMGDASQ RLAHCFANAL EARLRGSPVI  300
QTYYNAITSL KETASDILKA YRVYLSSSPF VTLMYFFSFR MILDAAKDAE VLHIVDFGIL  360
YGFQWPMFIQ YMSGRKDVPR KLRITGIELP QRGLRPAERI EETGRRLAEY CKRFNVPFEY  420
KAIASQHWES IRLDEFNIRP GEVLAVNAGL RLKTLQDETG GEETCPRDAV LKLIRKMNPD  480
VFVHAIVNGS FNAPFFISRF KEAVYHYYAL FDMFDSTLPR DNQERIRFER EFYGREAMNV  540
IACEEGDRVE RPETYRQWQV RMVRAGFKQK PVRDEIVELF REKLKKWRYH KDFVVDENSK  600
WLLQGWKGRT LYASSCWVPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-422466178374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226235KKKKKKKKKK
2227235KKKKKKKKK
3229235KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125051.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125050.10.0PREDICTED: scarecrow-like protein 34 isoform X2
RefseqXP_009125051.10.0PREDICTED: scarecrow-like protein 34 isoform X2
SwissprotP0C8840.0SCL34_ARATH; Scarecrow-like protein 34
TrEMBLM4EHX60.0M4EHX6_BRARP; Uncharacterized protein
STRINGBra028391.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29065.10.0GRAS family protein