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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | XP_009125052.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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| Family | GRAS | ||||||||
| Protein Properties | Length: 1308aa MW: 149565 Da PI: 6.9196 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 361.2 | 1.5e-110 | 331 | 701 | 1 | 371 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95
l++lL++cA+avss+d ++a+ lL ++++++s++gd ++Rla+y++ L+arla++++++y al++++ts s+ l+a++++ v+P+ k +
XP_009125052.1 331 LRTLLVSCAQAVSSNDRKMAEDLLRQVRQHSSSHGDGTERLAHYLADSLEARLAGTGTQIYTALSSKKTS---ASDMLKAYQTYISVCPFKKTAI 422
6789**************************************************************9999...9********************* PP
GRAS 96 ltaNqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrle 187
+ aN+ I+ + ++ +++HiiDf+is+G+QWp+L++ La R++g+ +lRiTg++ p+ g +e ++etgerLa+++++ +vpfe+n +a+++e
XP_009125052.1 423 IFANHSIMHLAPTDaKTIHIIDFGISYGFQWPPLIHRLAWRRGGSCKLRITGIELPQRGfrPAEGVNETGERLARYCQRYNVPFEYNG-IAQKWE 516
*********99888799****************************************99*****************************.7***** PP
GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
+++le+L++++gE +aVn+ ++ +llde+v+++s+rd+vLkl+k+++P+v++ + ++n++ F++rf e l +ys+lfd+ +++lpr + r
XP_009125052.1 517 TIKLEDLKLREGEFVAVNSLFRFRNLLDETVAVHSPRDAVLKLIKKIKPNVFIPAVLSGSYNAPFFVTRFREVLFHYSSLFDMCDTSLPRGDPMR 611
*********************************************************************************************** PP
GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvS 371
++ E+e+ grei+nvvaceg+er+er e++++W++r ++aGF++++l+++ +++ kl+++ + s+++ v+++ ++l++gWk+r +++ +
XP_009125052.1 612 VMFEKEFYGREIMNVVACEGSERVERPESYKQWQARAMRAGFRQLTLEKELVQKLKLMVESGYrSKEFDVDQDGNWLLQGWKGRIVYASC 701
************************************************************99999********************99876 PP
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| 2 | GRAS | 348.4 | 1.2e-106 | 931 | 1305 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94
++lL++cA+a+s+gd++ a lL ++++ +sp gd+ qRla++f++AL+arl + ++ + ++ ++ +++ s+ l+a++++ sP++++
XP_009125052.1 931 RTLLTHCAQAISTGDKTTALDLLLQIRQDSSPMGDASQRLAHCFANALEARLRG-SPVIQTYYNAITSLKETASDILKAYRVYLSSSPFVTLM 1022
689**************************************************9.444444446666666679******************** PP
GRAS 95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
++ ++Il+a++ +e +Hi+Df+i +G+QWp ++q ++ R++ p +lRiTg++ p+ g +e++eetg+rLa+++++++vpfe++++++++
XP_009125052.1 1023 YFFSFRMILDAAKDAEVLHIVDFGILYGFQWPMFIQYMSGRKDVPRKLRITGIELPQRGlrPAERIEETGRRLAEYCKRFNVPFEYKAIASQH 1115
**********************************************************9*****************************9999* PP
GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
+e+++l+e++++pgE+laVn l+l++l de++ e +rd+vLkl+++++P+v+v++ + + n++ F rf ea+++y alfd+++++lpr
XP_009125052.1 1116 WESIRLDEFNIRPGEVLAVNAGLRLKTLQDETGGEETcPRDAVLKLIRKMNPDVFVHAIVNGSFNAPFFISRFKEAVYHYYALFDMFDSTLPR 1208
*********************************999999****************************************************** PP
GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvs 369
+++eri Ere+ gre++nv+ace+ +r+er et+++W+ r+ +aGFk+ p+++++++ + l+k + + v+e+s++l++gWk+r+L++
XP_009125052.1 1209 DNQERIRFEREFYGREAMNVIACEEGDRVERPETYRQWQVRMVRAGFKQKPVRDEIVELFREKLKKWRyHKDFVVDENSKWLLQGWKGRTLYA 1301
*****************************************************************9998999********************* PP
GRAS 370 vSaW 373
S+W
XP_009125052.1 1302 SSCW 1305
**** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 64.277 | 305 | 683 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 5.2E-108 | 331 | 701 | IPR005202 | Transcription factor GRAS |
| PROSITE profile | PS50985 | 61.008 | 904 | 1285 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 4.0E-104 | 931 | 1305 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0042802 | Molecular Function | identical protein binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 1308 aa Download sequence Send to blast |
MGSYSAGFPG SFDNFDFNYG DGFYLDDQAL LEIPSPFPPP PPAPPHPDPY SHAADAESDF 60 SDSVLKYISQ VLMEEDMEEK PCMFHDALSL QAAEKSLYEA LGQKYPDHPE RLAHSPDGSS 120 PGYASSTTSS DWSFDCLENS RRPSWLHSPI SNNFVFQSTR SNPKPSGGSN VALKSSFNND 180 LVSNMFNDSE LAFQFNRGKE EASKFLPKSS QLVIDVESYI PPNNDPKEHH SVLPYRSTGK 240 KKHWREDEHF LSEERSKKQS AVYVDEAELS EMFDKVLLFG RPKEQPLCIL NDNFIKETAK 300 DDSSSSYKSD TTQQKHAASG NSYKKETTPD LRTLLVSCAQ AVSSNDRKMA EDLLRQVRQH 360 SSSHGDGTER LAHYLADSLE ARLAGTGTQI YTALSSKKTS ASDMLKAYQT YISVCPFKKT 420 AIIFANHSIM HLAPTDAKTI HIIDFGISYG FQWPPLIHRL AWRRGGSCKL RITGIELPQR 480 GFRPAEGVNE TGERLARYCQ RYNVPFEYNG IAQKWETIKL EDLKLREGEF VAVNSLFRFR 540 NLLDETVAVH SPRDAVLKLI KKIKPNVFIP AVLSGSYNAP FFVTRFREVL FHYSSLFDMC 600 DTSLPRGDPM RVMFEKEFYG REIMNVVACE GSERVERPES YKQWQARAMR AGFRQLTLEK 660 ELVQKLKLMV ESGYRSKEFD VDQDGNWLLQ GWKGRIVYAS CTLVPILFLD SSPSFDFDRN 720 PSFLADPTEE PDENDSSTTL LRYVTQILME ESAGDKQSMF YDSLALRKTE EMLQQVITDS 780 KAHSATSGSI GSSSSSWSSS VPVHEIVVRS MFSDAESDLQ FRRGLEEARK FLPNSDQWVF 840 NLEKPAVREV IKEERVKKSH QREVLDLEEQ VRSSKQSATN VEDVEVTDMF DKVLLLDGQC 900 DPQTLSSQET MSNKKKKKKK KKKKSQVIDF RTLLTHCAQA ISTGDKTTAL DLLLQIRQDS 960 SPMGDASQRL AHCFANALEA RLRGSPVIQT YYNAITSLKE TASDILKAYR VYLSSSPFVT 1020 LMYFFSFRMI LDAAKDAEVL HIVDFGILYG FQWPMFIQYM SGRKDVPRKL RITGIELPQR 1080 GLRPAERIEE TGRRLAEYCK RFNVPFEYKA IASQHWESIR LDEFNIRPGE VLAVNAGLRL 1140 KTLQDETGGE ETCPRDAVLK LIRKMNPDVF VHAIVNGSFN APFFISRFKE AVYHYYALFD 1200 MFDSTLPRDN QERIRFEREF YGREAMNVIA CEEGDRVERP ETYRQWQVRM VRAGFKQKPV 1260 RDEIVELFRE KLKKWRYHKD FVVDENSKWL LQGWKGRTLY ASSCWVPA |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 4e-42 | 327 | 1305 | 1 | 374 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 914 | 923 | KKKKKKKKKK |
| 2 | 915 | 923 | KKKKKKKKK |
| 3 | 917 | 923 | KKKKKKK |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | XP_009125052.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_009125052.1 | 0.0 | PREDICTED: scarecrow-like protein 33 isoform X3 | ||||
| Swissprot | P0C883 | 0.0 | SCL33_ARATH; Scarecrow-like protein 33 | ||||
| TrEMBL | D7LKB7 | 0.0 | D7LKB7_ARALL; Scarecrow transcription factor family protein | ||||
| STRING | scaffold_401365.1 | 0.0 | (Arabidopsis lyrata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM358 | 27 | 189 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G29060.1 | 0.0 | GRAS family protein | ||||




