PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125118.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 92aa    MW: 10523.9 Da    PI: 8.5137
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125118.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.83.5e-0722591854
                    HHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH 18 safeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                    +   +Lre+lP+   + +s K+s + +L+++++YI++L
  XP_009125118.1 22 DLVTKLREILPEiGQRRRSDKVSASKVLQETCNYIRNL 59
                    66679*******999*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.01459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-71975IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-42059IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.36E-72081IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSNRRSRQSS SAPRISDDQI IDLVTKLREI LPEIGQRRRS DKVSASKVLQ ETCNYIRNLN  60
REVDNLSERL AQLLESVDED SPQAAVIRSL LM
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125118.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882462e-90AY088246.1 Arabidopsis thaliana clone 4734 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125118.13e-58PREDICTED: transcription factor PRE1
SwissprotQ9LJX11e-49PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A397YL077e-57A0A397YL07_BRACM; Uncharacterized protein
TrEMBLM4EI287e-57M4EI28_BRARP; Uncharacterized protein
STRINGBra028443.1-P1e-57(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25928225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.15e-52bHLH family protein