PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125174.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 197aa    MW: 23010.7 Da    PI: 4.494
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125174.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM62.21.6e-1981391128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lp+GfrF+Ptd e+ +++L+ k+ ++++++ +v +e+ di++  P+dLp   + +e++wyf++++ + + t        ++++Wk+ g+++ vl+
  XP_009125174.1   8 LPVGFRFRPTDCEISKYFLTTKALEQRMRAPNVPEEChDIFSRRPRDLPG--YPRETHWYFYCRKLEGQVT----F--NSHSIWKQIGEETGVLD 94 
                     79****************************99999999***********4..34789******99775433....2..24679***********9 PP

             NAM  95 k..kgelvglkktLvfy.........kgrapkgektdWvmheyrl 128
                        +++lvg+k+ ++f            ++ ++ + +W+m+ ++l
  XP_009125174.1  95 PknNDTLVGIKRPFTFVdheepddilLSDKDESPQYNWFMDVFSL 139
                     8666677**********6665555443666677799999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-257156IPR003441NAC domain
PROSITE profilePS5100526.5468156IPR003441NAC domain
PfamPF023652.1E-129138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEPKHKALPV GFRFRPTDCE ISKYFLTTKA LEQRMRAPNV PEECHDIFSR RPRDLPGYPR  60
ETHWYFYCRK LEGQVTFNSH SIWKQIGEET GVLDPKNNDT LVGIKRPFTF VDHEEPDDIL  120
LSDKDESPQY NWFMDVFSLP LTISETDWVL CHVFRKNNEP ESEEEGENEE KETVDAESLD  180
LLIEKDGNIL PPSPSPP
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125174.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2325430.0AC232543.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH006F04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125174.11e-145PREDICTED: protein ATAF2-like
RefseqXP_013651867.11e-145protein ATAF2-like
TrEMBLA0A397YN351e-143A0A397YN35_BRACM; Uncharacterized protein
TrEMBLM4EI711e-143M4EI71_BRARP; Uncharacterized protein
STRINGBra028486.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.14e-79NAC family protein