PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125328.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 455aa    MW: 51765.8 Da    PI: 4.7514
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125328.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3397.42e-121302781257
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     ++lk+rmwkdq+l+++lk++k++++   ++ ++     ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WW
  XP_009125328.1  30 DDLKRRMWKDQNLMEKLKQQKRDNT---DV-VSL--PTHRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWW 118
                     79********************976...33.444..4589******************************************************* PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     ke+v fd+n+p+a++ y    l+++ ++  + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+elwwge+g++++q
  XP_009125328.1 119 KENVDFDQNAPNAVAGY--LTLAAAAAELIEKEPSSLLHMLQELQDTTLGSLLSALMQHCAPPQRRFPLEKGIAPPWWPTGTELWWGEQGAAHEQ 211
                     *****************..345555555667799************************************************************* PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                     g ppy+kphdl+k wkvsvL+avikhmsp++ ++r+l+rqsk+lqdkm+ake++++++vlnqee+++
  XP_009125328.1 212 GVPPYRKPHDLRKSWKVSVLAAVIKHMSPNLGRVRRLARQSKCLQDKMMAKETDTWSRVLNQEEALL 278
                     ****************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048738.2E-11930275No hitNo description
Gene3DG3DSA:1.10.3180.103.8E-68151279IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.31E-59154278IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0080167Biological Processresponse to karrikin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MVEVEELEPL SPVEDGDEGE EEEEEDISYD DLKRRMWKDQ NLMEKLKQQK RDNTDVVSLP  60
THRAEASRRK KMARSQDSVL KYMMKIMEVC KAKGFVYGIV PEKGKPITGS SDSLRRWWKE  120
NVDFDQNAPN AVAGYLTLAA AAAELIEKEP SSLLHMLQEL QDTTLGSLLS ALMQHCAPPQ  180
RRFPLEKGIA PPWWPTGTEL WWGEQGAAHE QGVPPYRKPH DLRKSWKVSV LAAVIKHMSP  240
NLGRVRRLAR QSKCLQDKMM AKETDTWSRV LNQEEALLNI KDLKISEDQE ASGSKTKRKG  300
DNIIEPSKSV YTCQNSSCPK SDASLGFMDK NSRTGHEIQC LYGSSSQSTG ETSSVLETAP  360
SIGTNTTSED DYSASSSAMG KRDHDDHSNW LDYLWYERMQ QEFNFSRRLE DVDDDTAVDL  420
NQLLESDQSS DNVDHNNFSV WDMGCEDKDI YMFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A1e-591552774126Protein ETHYLENE INSENSITIVE 3
4zds_B1e-591552774126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125328.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400890.0AC240089.1 Brassica oleracea clone BOT01-64A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125328.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
RefseqXP_013712350.10.0putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A3P6AL050.0A0A3P6AL05_BRACM; Uncharacterized protein
TrEMBLM4EII60.0M4EII6_BRARP; Uncharacterized protein
STRINGBra028601.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]