PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125436.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 229aa    MW: 25376.9 Da    PI: 4.5957
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125436.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19.3e-182070155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f tae+A +a++ a+++++g
  XP_009125436.1 20 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAMRAHDVAALSIKG 70
                    68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-112070IPR001471AP2/ERF domain
PROSITE profilePS5103222.4712178IPR001471AP2/ERF domain
SMARTSM003805.9E-352184IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-312179IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-212178IPR016177DNA-binding domain
PRINTSPR003673.9E-102233IPR001471AP2/ERF domain
CDDcd000182.67E-312280No hitNo description
PRINTSPR003673.9E-104460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MVDSSSLGSD KEKKGGSKQP VYRGVRMRSW GKWVSEIREP RKKSRIWLGT FQTAEMAMRA  60
HDVAALSIKG SSAILNFPEL SDSLPRPVSL SPRDVRAAAT KAALMDFGTK QVRHARAESE  120
SNETATYDKG SESESNASSK RSESESSETA SSCVTSIDEE SRVSDDLEKI VELPSLGTSL  180
DESNEFVFYD TLEDLVFMPS WLRGGPGDDF TYNNNDYPLN SVFDESFSW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-191679973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.23840.0leaf| silique
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125436.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125436.11e-167PREDICTED: ethylene-responsive transcription factor ERF043
SwissprotQ9M0805e-93ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLM4D4H91e-165M4D4H9_BRARP; Uncharacterized protein
STRINGBra011383.1-P1e-166(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-91ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]