PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125554.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 352aa    MW: 38890.5 Da    PI: 8.2194
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125554.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00029157179123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++Fs+   L  H  +H
  XP_009125554.1 157 YQCKTCDRTFSSFQALGGHRASH 179
                     9***********99999998887 PP
2zf-C2H213.90.00017231253123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++Cg  F++   L  H+r+H
  XP_009125554.1 231 HKCGICGAEFTSGQALGGHMRRH 253
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-8156179No hitNo description
PfamPF139128.3E-12156181IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.887157184IPR007087Zinc finger, C2H2
SMARTSM003550.034157179IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280159179IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8226253No hitNo description
Gene3DG3DSA:3.30.160.603.4E-4229255IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.5E-11230255IPR007087Zinc finger, C2H2
PROSITE profilePS501579.951231255IPR007087Zinc finger, C2H2
SMARTSM003550.023231253IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280233253IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MEAFEEAIAA SKEQSLILKG KRTKRQRPQS PVPFSSSPPI VSCHAHDIEE EYTDLDSKEN  60
ALGNNVENHK KDGVITSSSS SASWSSNNNP TLKAEEDEED LDIASCLILL SRGHSLPQLK  120
IPNHETTYNN KTYKFSSRRF LETSSSNGGG KAGYYVYQCK TCDRTFSSFQ ALGGHRASHK  180
KPKATSFYSN LEHLKKNIYE NDSLATTTTI YNNNKNRSLV VYGKAGNNKV HKCGICGAEF  240
TSGQALGGHM RRHRGAVVVA PTVTVALAAA NTELSLSSMS FDQISTKRAK KMVVSLDLDL  300
NLPALELEDE NMVNGFSLGF KQKHEQEHQQ TKQRDEPKCL VLSPPTSVDC HY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893880.0AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125554.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A398ACI80.0A0A398ACI8_BRACM; Uncharacterized protein
TrEMBLM4EJ260.0M4EJ26_BRARP; Uncharacterized protein
STRINGBra028791.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.11e-136C2H2 family protein