PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125683.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 255aa    MW: 28811 Da    PI: 6.2513
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125683.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.35.2e-2090139255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+W+AeIrdp     + +r++lg+f tae Aa a+++a++k++g
  XP_009125683.1  90 HYRGVRQRP-WGKWAAEIRDPQ----KgARVWLGTFETAEAAAIAYDEAALKFKG 139
                     7********.**********94....35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-3389148IPR001471AP2/ERF domain
SMARTSM003801.3E-3890153IPR001471AP2/ERF domain
PROSITE profilePS5103224.93590147IPR001471AP2/ERF domain
PfamPF008471.6E-1390139IPR001471AP2/ERF domain
CDDcd000183.47E-2290148No hitNo description
SuperFamilySSF541711.05E-2290148IPR016177DNA-binding domain
PRINTSPR003672.2E-1191102IPR001471AP2/ERF domain
PRINTSPR003672.2E-11113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MANQRNYGKR PSRAGESEKK ETEDEENIFP FFSDRSQYDT RAMVSALTQV IGNQSSTHDD  60
NQHHSDEYNQ QDSTQPISPK QDQGDLRKRH YRGVRQRPWG KWAAEIRDPQ KGARVWLGTF  120
ETAEAAAIAY DEAALKFKGS KAKLNFPERA QLASNSNSTI TGLPNYFSSN NQVYYSNPQP  180
TPYDNQYYYN QYLQQGGYSN DALSYDMAGG ETGGLMYNHQ TLSTTTSSSS GGSSRPQEDY  240
TRYLHFGDSS PYSGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2689149162ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Restricted to dividing quiescent center cells. {ECO:0000269|PubMed:24158907}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator of the phytosulfokine PSK5 peptide hormone. Binds to the GCC-box pathogenesis-related promoter element. Rate-limiting factor of quiescent center cell division active when surrounding stem cells are damaged. Is a proteolytic target of APC/C-FZR1 complex. {ECO:0000269|PubMed:24158907}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125683.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by brassinosteroid, but not regulated by ethylene. {ECO:0000269|PubMed:24158907}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125683.10.0PREDICTED: ethylene-responsive transcription factor ERF115-like
SwissprotQ9LY291e-116EF115_ARATH; Ethylene-responsive transcription factor ERF115
TrEMBLA0A398A7Y70.0A0A398A7Y7_BRACM; Uncharacterized protein
TrEMBLM4EIT80.0M4EIT8_BRARP; Uncharacterized protein
STRINGBra028703.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52921851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.11e-100ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang Y, et al.
    Shade avoidance 6 encodes an Arabidopsis flap endonuclease required for maintenance of genome integrity and development.
    Nucleic Acids Res., 2016. 44(3): p. 1271-84
    [PMID:26721386]
  4. Zhang Y, et al.
    TOPOISOMERASE1α Acts through Two Distinct Mechanisms to Regulate Stele and Columella Stem Cell Maintenance.
    Plant Physiol., 2016. 171(1): p. 483-93
    [PMID:26969721]
  5. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]