PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009125727.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

TCP

Protein Properties

Length: 229aa MW: 23957.7 Da PI: 10.2007

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009125727.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	124.2	1.5e-38	21	182	2	103
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssas...nsssg..... 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i ++tgt+++++s+++a+ s ss+ + XP_009125727.1 21 AVKKPPTKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSITAATGTGTTPPSFSTASLSASSSPfalG---Krflrg 112 79**************************************************************9999977733333333333330...145555 PP TCP 89 ......................................................kaaksaa..kskksqks 103 + +++a+ ++++q++ XP_009125727.1 113 eegesggpggggeltvghamssggggfwavparqdfgqvwsfaagatpemlftqQ-QQAATlfVRQQQQQQ 182 5566667777888888888888888888888888888888877666666666532.222221222222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	27.721	27	81	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	1.4E-32	27	165	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MENNDGAMTN GVIINKGPLN AVKKPPTKDR HSKVDGRGRR IRMPIICAAR VFQLTRELGH 60 KSDGQTIEWL LRQAEPSITA ATGTGTTPPS FSTASLSASS SPFALGKRFL RGEEGESGGP 120 GGGGELTVGH AMSSGGGGFW AVPARQDFGQ VWSFAAGATP EMLFTQQQQA ATLFVRQQQQ 180 QQASAAVAAM GEASAARVGN YLPGHHLNLL ASLSGGSPGS GRREEDDSR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bra.25926	0.0	flower

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaves, roots, and stems. {ECO:0000269\|PubMed:19286557}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of the circadian clock. Acts as a repressor of CCA1 by binding to its promoter. No binding to the LHY promoter. {ECO:0000269\|PubMed:19286557}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009125727.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009125727.1	1e-166	PREDICTED: transcription factor TCP21-like
Swissprot	Q9FTA2	1e-104	TCP21_ARATH; Transcription factor TCP21
TrEMBL	M4EIP7	1e-165	M4EIP7_BRARP; Uncharacterized protein
STRING	Bra028662.1-P	1e-166	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G08330.1	2e-61	TCP family protein

Publications ? help Back to Top
Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Ng DW,Chen HH,Chen ZJ Heterologous protein-DNA interactions lead to biased allelic expression of circadian clock genes in interspecific hybrids. Sci Rep, 2017. 7: p. 45087 [PMID:28345627] Lee CM, et al. Decoys Untangle Complicated Redundancy and Reveal Targets of Circadian Clock F-Box Proteins. Plant Physiol., 2018. 177(3): p. 1170-1186 [PMID:29794020]