PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125866.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 189aa    MW: 20970.2 Da    PI: 5.9398
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125866.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA46.41.3e-14151182132
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekklde 32 
                     +ep+YVNaKQy++Il+RR++Rak+e e+k+ +
  XP_009125866.1 151 QEPVYVNAKQYEGILRRRKARAKAELERKVIN 182
                     69***************************933 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5115218.183150189IPR001289Nuclear transcription factor Y subunit A
PfamPF020456.4E-11152184IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860155175IPR018362CCAAT-binding factor, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MQSKSGGRGN EEEVNQQQPM MMYPDPWWKN NSFGGVLPQE RPSGSESNDV HSPSEDDGGP  60
CKDSQAATSP PPPPVDNHGE EGNDPTHSMD DQQVVQPPEL VGHYIACVPN PYQDAYYGGM  120
MGAYGHHQPL GFRPYPGMAR ERTALPLDTT QEPVYVNAKQ YEGILRRRKA RAKAELERKV  180
INRKANGIK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:9662544}.
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125866.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3172997e-89AK317299.1 Arabidopsis thaliana AT5G12840 mRNA, complete cds, clone: RAFL21-66-A21.
GenBankBT0258017e-89BT025801.1 Arabidopsis thaliana At5g12840 mRNA, complete cds.
GenBankY137207e-89Y13720.1 Arabidopsis thaliana mRNA for Hap2a transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125864.11e-137PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
SwissprotQ9LXV51e-83NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLM4E3M51e-135M4E3M5_BRARP; Uncharacterized protein
STRINGBra023378.1-P1e-136(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.35e-63nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Siriwardana CL, et al.
    NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T.
    PLoS Genet., 2016. 12(12): p. e1006496
    [PMID:27977687]
  3. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]