PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009125891.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 247aa    MW: 28061.6 Da    PI: 9.529
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009125891.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM165.22.3e-51141381128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelvv+yLk+kv +++l++ ++i+++d+++++PwdLp +    eke yfFs+r+ ky++g+r+nrat sgyWkatg dk+v+++
  XP_009125891.1  14 LPPGFRFHPTDEELVVQYLKRKVLSSPLPA-SIISDFDVCRADPWDLPGS---LEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTS 104
                     79****************************.89***************44...5789********************************999988 PP

             NAM  96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++ vglkktLvfykg+ p+g++tdW+mheyrl
  XP_009125891.1 105 rGNQIVGLKKTLVFYKGKPPHGSRTDWIMHEYRL 138
                     57777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-6010160IPR003441NAC domain
PROSITE profilePS5100558.66614160IPR003441NAC domain
PfamPF023651.8E-2715138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010089Biological Processxylem development
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MDNVKLVKNG VMRLPPGFRF HPTDEELVVQ YLKRKVLSSP LPASIISDFD VCRADPWDLP  60
GSLEKERYFF STREAKYPNG NRSNRATGSG YWKATGIDKR VVTSRGNQIV GLKKTLVFYK  120
GKPPHGSRTD WIMHEYRLSS SPPSSMGPTQ NWVLCRIFLK KRAGNSDEGD NRNLVYDNEH  180
IEITTTNQTE DKTKPIFFDF MRKERTTDLN LLPGSPTSDH ASSGLTTEIF SSDEETSSSC  240
NSFRRNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-511216515170NO APICAL MERISTEM PROTEIN
1ut4_B2e-511216515170NO APICAL MERISTEM PROTEIN
1ut7_A2e-511216515170NO APICAL MERISTEM PROTEIN
1ut7_B2e-511216515170NO APICAL MERISTEM PROTEIN
3swm_A3e-511216518173NAC domain-containing protein 19
3swm_B3e-511216518173NAC domain-containing protein 19
3swm_C3e-511216518173NAC domain-containing protein 19
3swm_D3e-511216518173NAC domain-containing protein 19
3swp_A3e-511216518173NAC domain-containing protein 19
3swp_B3e-511216518173NAC domain-containing protein 19
3swp_C3e-511216518173NAC domain-containing protein 19
3swp_D3e-511216518173NAC domain-containing protein 19
4dul_A2e-511216515170NAC domain-containing protein 19
4dul_B2e-511216515170NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.102540.0bud| leaf| root| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00507DAPTransfer from AT5G13180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009125891.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9578370.0JF957837.1 Brassica napus NAC5 mRNA, complete cds.
GenBankKC9667590.0KC966759.1 Brassica napus NAC transcription factor 83 (NAC83.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009125891.10.0PREDICTED: NAC domain-containing protein 83-like
SwissprotQ9FY931e-145NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A398ACE20.0A0A398ACE2_BRACM; Uncharacterized protein
TrEMBLM4E3P20.0M4E3P2_BRARP; Uncharacterized protein
STRINGBra023395.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18062786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.11e-135NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]