PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126252.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 288aa    MW: 32269.1 Da    PI: 5.9341
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126252.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-183383256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                     ++GVr++  +g+WvAeIr+p     +  +r +lg+f t  eAa a+++a+kkl+g+
  XP_009126252.1 33 TFRGVRQRT-WGKWVAEIREP-----NhgTRLWLGTFNTSVEAAMAYDEAAKKLYGH 83
                    69****999.**********9.....336*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.06E-283288No hitNo description
PROSITE profilePS5103220.1263390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-283389IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-203389IPR016177DNA-binding domain
SMARTSM003802.4E-333396IPR001471AP2/ERF domain
PRINTSPR003672.3E-93445IPR001471AP2/ERF domain
PfamPF008471.7E-133483IPR001471AP2/ERF domain
PRINTSPR003672.3E-95672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEEEQPPAKK RNMGRSRKGC MKGKGGPENA TCTFRGVRQR TWGKWVAEIR EPNHGTRLWL  60
GTFNTSVEAA MAYDEAAKKL YGHEAKLNLL HPQQQQKEKV NRNLSFSLTG TSWDYKLEKV  120
HGLDLGLVPS SGSRGSWSGS FSFIQEDDKT TSESSVSWLL PKRSDSQDQE SVHAASSLTF  180
STKLKPMMTP DYGLSNGVGS RFLVEQEKKT VYDVSSSCGS SDNKESILVP SVGVGEVMHR  240
TEVEEGTGYL EMDDLLEIDD LGLLIGKNGD FKNWCCDEFQ HPWNWFLE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-153489359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126252.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0516261e-115AC051626.5 Genomic Sequence For Arabidopsis thaliana Clone F20L16 From Chromosome V, complete sequence.
GenBankAY5608531e-115AY560853.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g18450) mRNA, complete cds.
GenBankBT0260741e-115BT026074.1 Arabidopsis thaliana At5g18450 mRNA, complete cds.
GenBankCP0026881e-115CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126252.10.0PREDICTED: dehydration-responsive element-binding protein 2G-like
SwissprotP618271e-156DRE2G_ARATH; Dehydration-responsive element-binding protein 2G
TrEMBLM4E4H10.0M4E4H1_BRARP; Uncharacterized protein
STRINGBra023674.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99782035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18450.11e-138ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]