PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009126365.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NF-YC

Protein Properties

Length: 250aa MW: 27980.1 Da PI: 5.2708

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009126365.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	59.7	6.2e-19	6	86	18	98
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++++P +rikki+++dedv +i+ +P l+ska elf+ +l ++ + + +tl+ ++++v ++fdfl div + XP_009126365.1 6 QTRFPATRIKKIMQTDEDVGKIAMAVPLLVSKALELFLQDLCNHTYDVTLSRGAKTLNSVHLKQCVHAFNVFDFLRDIVSK 86 789***************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.1E-25	2	72	IPR009072	Histone-fold
Pfam	PF00808	1.0E-17	8	71	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	4.19E-19	18	88	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence Send to blast
MKKKLQTRFP ATRIKKIMQT DEDVGKIAMA VPLLVSKALE LFLQDLCNHT YDVTLSRGAK 60 TLNSVHLKQC VHAFNVFDFL RDIVSKVPDL GGSEGEDRPA TKRRKLVDES ISNDKDMKVT 120 SQTDFAKHSG GGRGRGRGQG GGRMGNDQSL KFEDDSPEGS KSPSPENWSL SHEAATWKKA 180 ASHKGNHTNT ELKVRDFDLN VELDENGEFA TSPERELEGR PGWPLFEIND MKIDSDQREV 240 SADEEDYDEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_A	7e-24	2	71	5	74	Transcription Regulator NC2 alpha chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009126365.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009126365.1	0.0	PREDICTED: dr1-associated corepressor
TrEMBL	M4DU48	1e-174	M4DU48_BRARP; Uncharacterized protein
STRING	Bra020041.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13968	21	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G19490.1	1e-106	NF-YC family protein