PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126515.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 216aa    MW: 24027.1 Da    PI: 4.3611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126515.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.7e-20555155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +k +g+WvAeIr p++   r r++lg+f+tae+Aa+a +aa  +l+g
  XP_009126515.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDTAEKAARAFDAALYCLRG 55
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.3E-12555IPR001471AP2/ERF domain
CDDcd000183.90E-28565No hitNo description
PROSITE profilePS5103221.983663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-30664IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-21664IPR016177DNA-binding domain
SMARTSM003803.4E-31669IPR001471AP2/ERF domain
PRINTSPR003677.0E-10718IPR001471AP2/ERF domain
PRINTSPR003677.0E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDTAE KAARAFDAAL YCLRGPGARF  60
NFPDNPPEIP GGRSLTPQQI QVVASRFACE EVLPPQQQQQ QQPPASPRGD KTEDGGGMSA  120
RGDISGGSGG PTSGQVGEDN NNQDNSNDTT SYWPFVWEEN HVVPTTSEEF GTFFMDDDST  180
NLYTQQQHQL SSDIYDDGAY AVVDDLSHYN INLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-166631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126515.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126515.11e-161PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5911e-108ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A398A7L61e-136A0A398A7L6_BRACM; Uncharacterized protein
STRINGBo2g023630.11e-132(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-82ERF family protein