PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126622.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 430aa    MW: 47336.9 Da    PI: 8.3327
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126622.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.3e-17118167155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  XP_009126622.1 118 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAVKFRG 167
                     78*******************......55***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.0E-8118167IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-15118175IPR016177DNA-binding domain
CDDcd000181.46E-11118174No hitNo description
Gene3DG3DSA:3.30.730.109.1E-17119175IPR001471AP2/ERF domain
PROSITE profilePS5103217.359119175IPR001471AP2/ERF domain
SMARTSM003801.3E-30119181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MMLDLNLDVV SAESTQMDES VTSNSSVVNA EASSCIDGEE ELCSTRAAVK FQFEILKGRG  60
GEEEEEDRKT KEFFPVAQSS RSSVDISFQR GTQGGDFVQP PPAQPVKKSR RGPRSKSSQY  120
RGVTFYRRTG RWESHIWDCG KQVYLGGFDT AHAAARAYDR AAVKFRGLEA DINFIISDYE  180
EDLKQMANLS KEEVVQVLRR QSSGFSRSNS RYQGVALQKN GGWGAQMKQF NGNMAVASLI  240
EPHASRIIPE AANVKLDLSL GISISLGDGP KQKDKAPRLH HPPNSMMDNH MAAATCDTPF  300
NLLKRASDHL INRHVLHPSA FFSPMERTPE KGFMSPSPQS YLARTWQAQD QFSGGTATAA  360
IASPLYSNAA SSGFSPSATR PPPSSTASAT LHPSQPFFNL NMPSLYVIHP SDYASQQQHH  420
HLMNRSQPPP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126622.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2347370.0AC234737.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH010D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126622.10.0PREDICTED: AP2-like ethylene-responsive transcription factor TOE2
SwissprotQ9LVG20.0TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLM4DUR90.0M4DUR9_BRARP; Uncharacterized protein
STRINGBra020262.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128361730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60120.11e-176target of early activation tagged (EAT) 2