PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126818.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family B3
Protein Properties Length: 498aa    MW: 56057 Da    PI: 4.615
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126818.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.3e-24153250199
                     EEEE-..-HHHHTT-EE--HHH..HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkf.aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     f+ + +++++l+++rl l+++f + +++++ ++++++ l +e+gr+W+++l+ + +sg++++t+GW++F+ angL  gDf+ Fkl++ s++++v+
  XP_009126818.1 153 FLRARVTPYSLTKDRLDLSRDFkFMSFDEN-KKPFEIYLANEKGRKWTLRLSRNISSGAFYITRGWSNFCAANGLIRGDFCYFKLSE-SGERPVL 245
                     6677899**************943233444.5899*****************9*******************************976.8888999 PP

                     EEE-S CS
              B3  95 kvfrk 99 
                      ++++
  XP_009126818.1 246 LLCSH 250
                     99987 PP
2B350.24.6e-16290389299
                     EEE-..-HHHHTT-EE--HHH....HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   2 fkvltpsdvlksgrlvlpkkf...aeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     ++   +++ +k+g+l+++      ++e g+k  +s ++tl d +gr+W  +l    + +++++++++GW+e+++ang++++D++v++l+  ++++
  XP_009126818.1 290 LTRKFTPSRFKTGQLYISMFSsgvLRESGIK--KSGEMTLLDNDGRKWPSYLHKtgQPGGEWCYIREGWREMCEANGVEVNDSFVLELIF-EDAN 381
                     5666788899999998775442214444666..4559***************7744555555**************************98.8888 PP

                     .EEEEE-S CS
              B3  92 lvvkvfrk 99 
                     + +k+++k
  XP_009126818.1 382 PIFKLHSK 389
                     99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.278194IPR003340B3 DNA binding domain
SMARTSM010191.8E-61194IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-93291IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-93591IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.5E-18144256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086316.356153250IPR003340B3 DNA binding domain
SMARTSM010193.6E-22153251IPR003340B3 DNA binding domain
SuperFamilySSF1019361.31E-19153251IPR015300DNA-binding pseudobarrel domain
PfamPF023624.6E-20153250IPR003340B3 DNA binding domain
CDDcd100173.14E-17163249No hitNo description
Gene3DG3DSA:2.40.330.104.1E-13284383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.33E-13286379IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.5E-13289390IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503289390IPR003340B3 DNA binding domain
PfamPF023624.9E-19289389IPR003340B3 DNA binding domain
CDDcd100171.50E-11318388No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MVVPPPKPSL FQLTFLTGDK PLLTLDDDEF LRNHTKVLLI SEASDKIWEV KLDGNRLAGG  60
WEEFAAVSNF SHGDVLVFRH NGEEIFHVAV SSESDDDESG ETDDRESDDD DEYDESNDTD  120
DSESDDSEDN DEGDSSLVNK SEKPEADTSS DCFLRARVTP YSLTKDRLDL SRDFKFMSFD  180
ENKKPFEIYL ANEKGRKWTL RLSRNISSGA FYITRGWSNF CAANGLIRGD FCYFKLSESG  240
ERPVLLLCSH ESGNVHEDKE EEEECPEADA VKICSVGGCS NEKSTPSRFL TRKFTPSRFK  300
TGQLYISMFS SGVLRESGIK KSGEMTLLDN DGRKWPSYLH KTGQPGGEWC YIREGWREMC  360
EANGVEVNDS FVLELIFEDA NPIFKLHSKI KNKGKGNIVT SKKRALHART AEKTPGVEID  420
GERGSKRGRT RGSQPESCSV SDQVANVRQS IQDTLDTIRH FRAELETREK NLEASLLEVD  480
DLGERILGIS KILNNNLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1182196KKPFEIYLANEKGRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in the reproductive meristem. {ECO:0000269|PubMed:10092172}.
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in flower development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0517720.0AF051772.1 Brassica oleracea var. botrytis reproductive meristem gene 1 (REM1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126818.10.0PREDICTED: B3 domain-containing protein REM1
SwissprotO650980.0REM1_BRAOB; B3 domain-containing protein REM1
TrEMBLM4D4810.0M4D481_BRARP; Uncharacterized protein
STRINGBra011285.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM99501736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31610.11e-150B3 family protein
Publications ? help Back to Top
  1. Franco-Zorrilla JM, et al.
    Identification of genes specifically expressed in cauliflower reproductive meristems. Molecular characterization of BoREM1.
    Plant Mol. Biol., 1999. 39(3): p. 427-36
    [PMID:10092172]