PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126838.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family AP2
Protein Properties Length: 559aa    MW: 60769.4 Da    PI: 7.5418
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126838.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14204263155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  XP_009126838.1 204 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 263
                     57*******************666664477446**********99*************98 PP
2AP246.31.1e-14308357355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  XP_009126838.1 308 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 357
                     9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.16E-16204273IPR016177DNA-binding domain
PfamPF008471.0E-11204263IPR001471AP2/ERF domain
CDDcd000184.45E-20204273No hitNo description
SMARTSM003804.3E-26205277IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.2E-14205271IPR001471AP2/ERF domain
PROSITE profilePS5103218.492205271IPR001471AP2/ERF domain
PRINTSPR003673.1E-6206217IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18306367IPR016177DNA-binding domain
CDDcd000186.75E-25306367No hitNo description
SMARTSM003803.7E-33307371IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.0E-18307365IPR001471AP2/ERF domain
PROSITE profilePS5103219.203307365IPR001471AP2/ERF domain
PfamPF008471.5E-9308357IPR001471AP2/ERF domain
PRINTSPR003673.1E-6347367IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MKNNNNKSSS SYDSSLSPSS SSSSHQNWLS FSLSNNNNFN SSSNPNLATS TSDHHHHHHH  60
HPHPSHVSLF QAFSTTPVHR HDESPGASSS DATAVLSMYP GGPKLENFLG GGATTTTTGE  120
MQQGQSLGGV VFSSNVEQPR HPPSAAEIYD YELKSIAASF LGNYSGGHSS EVSSGQKQQH  180
NPPTATEASP TPKKNVESFG QRTSIYRGVT RHRWTGRYEA HLWDNSCRRE GQSRKGRQVY  240
LGGYDKEDKA ARAYDLAALK YWGPTTTMNF SISNYEPELE EMKHMTRQEF VASLRRKSSG  300
FSRGASMYRG VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGLNA  360
VTNFDISRYD VKSIASCNLP VGGLNPKPSP VTPAPDKQVD ISPSDPPSLT TPSLTFNAAT  420
PVHDHEGAFF HTGIPIKQDP AAHYWSNVFG FPPNLKTETR PIATFGSDLH STSPGFTVMP  480
VMQDGGNNFG GGFVESEGYN NNHSAASSPV SAIPLPSTVD NSNEGYGGNI NWISNNTSNS  540
YQTAKSNLSV LQTPVFGLE
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126838.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5198210.0AB519821.1 Brassica napus BnEMK mRNA for AP2 domain transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126838.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ30.0AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLM4DVA00.0M4DVA0_BRARP; Uncharacterized protein
STRINGBra020444.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM115832833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.10.0AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]