PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009126865.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 149aa    MW: 16142.9 Da    PI: 8.2153
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009126865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-20555155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    ++y+GVr +k +g+WvAeIr p++   r r++lg+f+tae+Aa+a +aa  +l+g
  XP_009126865.1  5 PKYTGVRKRK-WGKWVAEIRLPNS---RERIWLGSFDTAEKAARAFDAALYCLRG 55
                    79*****999.**********933...5*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.6E-12555IPR001471AP2/ERF domain
CDDcd000181.04E-27565No hitNo description
SuperFamilySSF541711.31E-21665IPR016177DNA-binding domain
PROSITE profilePS5103221.983663IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-30664IPR001471AP2/ERF domain
SMARTSM003803.4E-31669IPR001471AP2/ERF domain
PRINTSPR003674.1E-10718IPR001471AP2/ERF domain
PRINTSPR003674.1E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MDASPKYTGV RKRKWGKWVA EIRLPNSRER IWLGSFDTAE KAARAFDAAL YCLRGPGARF  60
NFPDNPPEIP GGRSLTPQQI QVVASRFACE EVLPPQQQQQ QQPPASPRGD KTEDGGGISA  120
RGDISGGSGG PTSGQVGEDN NNHEDNVKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-176631472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009126865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1409774e-93AC140977.1 Arabidopsis thaliana chromosome 5 BAC F13M11 genomic sequence, complete sequence.
GenBankAL5898834e-93AL589883.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T6G21 (ESSA project).
GenBankAY5608664e-93AY560866.1 Arabidopsis thaliana putative AP2/EREBP transcription factor (At5g21960) mRNA, complete cds.
GenBankBT0115774e-93BT011577.1 Arabidopsis thaliana At5g21960 mRNA, complete cds.
GenBankBT0122434e-93BT012243.1 Arabidopsis thaliana At5g21960 gene, complete cds.
GenBankCP0026884e-93CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009126865.11e-106PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5914e-80ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLM4DUG91e-105M4DUG9_BRARP; Uncharacterized protein
STRINGBra020162.1-P1e-105(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141671424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.11e-63ERF family protein