PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127048.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 311aa    MW: 33418.4 Da    PI: 6.5074
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127048.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.00121535323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C  C+k F++   L  H+r H
  XP_009127048.1 15 CCVCHKKFPSMKALYGHMRFH 35
                    9******************99 PP
2zf-C2H211.70.0008169191123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C  C+ksF++   L  H  +H
  XP_009127048.1 169 HVCVTCNKSFTSYQALGGHRASH 191
                     79**********99999998887 PP
3zf-C2H214.20.00012236258123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++C+ksF++   L  H r+H
  XP_009127048.1 236 HVCNKCHKSFPTGQALGGHKRRH 258
                     79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551.41335IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.5591335IPR007087Zinc finger, C2H2
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
PfamPF139123.7E-41536IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-5168191No hitNo description
SMARTSM003550.37169191IPR015880Zinc finger, C2H2-like
PfamPF139122.5E-10169193IPR007087Zinc finger, C2H2
PROSITE profilePS501579.452169196IPR007087Zinc finger, C2H2
PROSITE patternPS000280171191IPR007087Zinc finger, C2H2
SuperFamilySSF576671.94E-5231258No hitNo description
SMARTSM003550.1236258IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.39236258IPR007087Zinc finger, C2H2
PfamPF139126.4E-12236259IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVSAGDERGE FEVDCCVCHK KFPSMKALYG HMRFHPDRGW KGVLPPHHPL GNLSSSTIST  60
DDDDDDDDDH WELGNVVDLK ESVKGSWTTG KRARRSALKI DESDIDARNL LVLATTAEAV  120
DLDVVGTSDS LSGEEVMTKK KKKKKRLSEM VEVVVGGADE EGGGAHEKHV CVTCNKSFTS  180
YQALGGHRAS HNKVKVLENH HARANGEALL LGTEAMITGL GSAQGPNTSL SSIGDHVCNK  240
CHKSFPTGQA LGGHKRRHWT GPASSEVATA VPSAATAPGG ASASQVIETV QEVKKRKLLE  300
FDLNELPPNE E
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127048.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893780.0AC189378.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB049H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127048.20.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLM4F3F90.0M4F3F9_BRARP; Uncharacterized protein
STRINGBra035609.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM66182443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.13e-89C2H2 family protein