PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127124.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 156aa MW: 17922.1 Da PI: 7.969

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127124.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	9	64	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k+ ++t++q+++Le++F n++++ + + +L++ lgL++rqV vWFqN+Ra+ k XP_009127124.1 9 RNKKKRLTQDQVRQLEKCFTLNNKLDPDLKLQLSNTLGLPQRQVAVWFQNKRARSK 64 567889************************************************99 PP
2	HD-ZIP_I/II	103.6	1.7e-33	10	102	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +kk+rl+++qv++LE++F+ ++kL+p+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE +y L+++++a+ +++++Le++v+ L++elk+ XP_009127124.1 10 NKKKRLTQDQVRQLEKCFTLNNKLDPDLKLQLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYCNLQSKLEAVLSDKAKLEHKVQFLQDELKR 102 59****************************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.9E-18	4	69	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.17E-18	4	67	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.941	6	66	IPR001356	Homeobox domain
SMART	SM00389	8.6E-18	8	70	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-16	9	64	IPR001356	Homeobox domain
CDD	cd00086	2.61E-14	9	67	No hit	No description
PROSITE pattern	PS00027	0	41	64	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009637	Biological Process	response to blue light
GO:0009646	Biological Process	response to absence of light
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MENPQGQSRN KKKRLTQDQV RQLEKCFTLN NKLDPDLKLQ LSNTLGLPQR QVAVWFQNKR 60 ARSKTQSLEL QYCNLQSKLE AVLSDKAKLE HKVQFLQDEL KRSRNQLALF THQDSPVDDS 120 NLGSCEEGHD NQVVVFDELY DCFVTSGHGS SSTSWV

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127124.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127124.1	1e-112	PREDICTED: homeobox-leucine zipper protein ATHB-52
Swissprot	Q9FN29	2e-94	ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBL	A0A398AG74	1e-110	A0A398AG74_BRACM; Uncharacterized protein
TrEMBL	M4E1N7	1e-110	M4E1N7_BRARP; Uncharacterized protein
STRING	Bra022687.1-P	1e-111	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12107	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	7e-97	homeobox protein 52