PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127148.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GRF

Protein Properties

Length: 299aa MW: 32577.5 Da PI: 8.6482

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127148.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.2	3.4e-24	57	99	2	44
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 epgrCrRtDGKkWRCs++v++++k+CErHlhrgr rsrk++e XP_009127148.1 57 LEPGRCRRTDGKKWRCSKEVVSNHKYCERHLHRGRPRSRKHVE 99 69***************************************97 PP
2	QLQ	51.4	3.2e-18	8	39	2	33
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlq 33 +FT+aQl +L++Q+++yKy++a+ PvP +Ll+ XP_009127148.1 8 PFTNAQLKELERQAMIYKYMIASIPVPFDLLV 39 9*****************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.1E-10	7	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.186	8	43	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	2.8E-11	8	38	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	23.629	56	100	IPR014977	WRC domain
Pfam	PF08879	1.3E-19	58	99	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010114	Biological Process	response to red light
GO:0010218	Biological Process	response to far red light
GO:0080167	Biological Process	response to karrikin
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGCYYYYPFT NAQLKELERQ AMIYKYMIAS IPVPFDLLVS SSSYAPPCNN KNAVGDLEPG 60 RCRRTDGKKW RCSKEVVSNH KYCERHLHRG RPRSRKHVEL PYSRPINIGG GSEKNRVLSS 120 IKDTTVVEPK EVSSALANYR GLEIFPASAS NEQENKYLNF IDVWSDGVRS SEKQSTPASS 180 SPNGNPSLYS LDLSMGGNSL MGHDEMGLRV IGPGRDDPHG YGPYGGVVSS SLDEMSRWLA 240 STSATPGGPL AEILRPNPSS AFSGEMEGNS LTATPTPSSS PSRVVKKVTG SVSDDSSKI

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of leaf development and expression decreases with the maturation of the leaf. {ECO:0000269\|PubMed:20023165}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127148.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127147.1	0.0	PREDICTED: growth-regulating factor 7 isoform X1
Refseq	XP_009127148.1	0.0	PREDICTED: growth-regulating factor 7 isoform X2
Swissprot	Q9FJB8	1e-152	GRF7_ARATH; Growth-regulating factor 7
TrEMBL	M4E1L7	0.0	M4E1L7_BRARP; Uncharacterized protein
STRING	Bra022667.1-P	0.0	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53660.1	1e-134	growth-regulating factor 7

Publications ? help Back to Top
Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]