PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127261.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 224aa    MW: 24138.1 Da    PI: 6.2912
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127261.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-1469117255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++G+r +  +g+Wv+eIr+p++   ++r++lg++  +e+Aa+a++ a+++l+g
  XP_009127261.1  69 LFRGIRLR--NGKWVSEIREPRK---TTRIWLGTYPLPEMAAAAYDVAALALKG 117
                     689**875..6*********843...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.79E-1768125IPR016177DNA-binding domain
CDDcd000184.48E-1568125No hitNo description
PROSITE profilePS5103219.2369125IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-2469125IPR001471AP2/ERF domain
PfamPF008471.1E-869117IPR001471AP2/ERF domain
SMARTSM003804.5E-2669131IPR001471AP2/ERF domain
PRINTSPR003671.0E-57081IPR001471AP2/ERF domain
PRINTSPR003671.0E-5107127IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSNGSNSPTT RTTSFRVASL ALPSKSSDQS PQSSPGSSSS PTPTRRPSLP AGGSPARRTA  60
TGLSGRHSLF RGIRLRNGKW VSEIREPRKT TRIWLGTYPL PEMAAAAYDV AALALKGPDA  120
VLNFPGLALT YVAPASNSAA DIRAAAGRAA EMKQPERVLE PGQSEKEEEE EAILSSSLEF  180
MDEEAMLNMP NLLTEMAHGM LMSPPRMTDP APENHEEDSL WSYR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.58351e-148bud| leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127261.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127261.11e-160PREDICTED: ethylene-responsive transcription factor ERF025-like
SwissprotQ9FJ905e-91ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLM4E1C51e-159M4E1C5_BRARP; Uncharacterized protein
STRINGBra022573.1-P1e-159(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134571424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.16e-65ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]