PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127274.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 188aa    MW: 21910.2 Da    PI: 7.3447
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127274.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.13.8e-142576255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +++h e+Er+RR+++ s ++ Lr+llP  +   ++K s ++ + +Av+YI +L+
  XP_009127274.1 25 KMMHREIERQRRQEMASLYASLRSLLPLHF--IQGKRSTSDQVNEAVNYITYLE 76
                    789*************************65..*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.19E-142190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.9352375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-112576IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-82580No hitNo description
Gene3DG3DSA:4.10.280.106.0E-112589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-62981IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MDDCREKRRR CTKLRVSTDN NDMEKMMHRE IERQRRQEMA SLYASLRSLL PLHFIQGKRS  60
TSDQVNEAVN YITYLEKKIK ELSLRRDELM LLSRGTPLDD SKDEMETMNH VVVRQCLVGV  120
EIVFSSRSCR GQPRLSSVLQ VLSENGLCLL NSISSIVDDR LIYTLQAEVN DSNLIDLSEL  180
EERLTRMK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3174302e-77AK317430.1 Arabidopsis thaliana AT5G51780 mRNA, complete cds, clone: RAFL24-28-D24.
GenBankBT0109522e-77BT010952.1 Arabidopsis thaliana At5g51780 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127274.11e-133PREDICTED: transcription factor bHLH36-like
SwissprotQ9FLI11e-88BH036_ARATH; Transcription factor bHLH36
TrEMBLA0A398ACQ41e-132A0A398ACQ4_BRACM; Uncharacterized protein
TrEMBLM4E1B41e-132M4E1B4_BRARP; Uncharacterized protein
STRINGBra022562.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44792754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-91bHLH family protein