PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127544.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CAMTA
Protein Properties Length: 1012aa    MW: 113027 Da    PI: 5.3257
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127544.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1173.62.8e-54111262116
            CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfq 95 
                     ++e ++rwlk+ e++ iL+n+e+++lt++++++p+sgsl+L+nr+++++frkDG++w++kkdg+++ E+he+LKvg+ve+l+cyY+h+e++ptfq
  XP_009127544.1  11 YHEaQTRWLKPPEVHFILQNHERYQLTHKAPQNPPSGSLLLFNRRVLKFFRKDGHQWRRKKDGRAIAEAHERLKVGNVEALSCYYVHGEHDPTFQ 105
                     56779****************************************************************************************** PP

            CG-1  96 rrcywlLeeelekivlvhyle 116
                     rr+yw+L+ e+++ivlvhy++
  XP_009127544.1 106 RRIYWMLDPEYDHIVLVHYRD 126
                     *******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.6267133IPR005559CG-1 DNA-binding domain
SMARTSM010762.8E-7710128IPR005559CG-1 DNA-binding domain
PfamPF038592.9E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.108.8E-10456544IPR013783Immunoglobulin-like fold
PfamPF018331.1E-8457540IPR002909IPT domain
CDDcd001021.84E-6457542No hitNo description
SuperFamilySSF812961.96E-17457541IPR014756Immunoglobulin E-set
Gene3DG3DSA:1.25.40.205.8E-14642738IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.345643735IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484033.89E-14645738IPR020683Ankyrin repeat-containing domain
CDDcd002048.11E-12648735No hitNo description
SMARTSM002488.9E-4676705IPR002110Ankyrin repeat
PROSITE profilePS5008811.06676708IPR002110Ankyrin repeat
PfamPF136372.7E-6678735No hitNo description
SMARTSM0001514789811IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.65E-6791897IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.638791818IPR000048IQ motif, EF-hand binding site
SMARTSM000150.97845867IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.407846875IPR000048IQ motif, EF-hand binding site
PfamPF006120.0078848866IPR000048IQ motif, EF-hand binding site
SMARTSM000156.3E-4868890IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.267869893IPR000048IQ motif, EF-hand binding site
PfamPF006126.6E-5871890IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1012 aa     Download sequence    Send to blast
MQSEYEISNL YHEAQTRWLK PPEVHFILQN HERYQLTHKA PQNPPSGSLL LFNRRVLKFF  60
RKDGHQWRRK KDGRAIAEAH ERLKVGNVEA LSCYYVHGEH DPTFQRRIYW MLDPEYDHIV  120
LVHYRDISDG KEGRQTSGTV LQFSQNASTL FSSPSSIGTQ NASYNHYIGD SADVLQQHSS  180
TSPEVNSEVV FNSNGVETPQ GSGSSYEFEN RQAIKRLEEQ LSLGDDIVST VDPLYAQNES  240
LDSLQFLAQP GTVYQRPENN KLERCYGGYV GAQYNVDPLY SQNESLDSLL SLDSAEDINH  300
LAQQATGHQR PENNRLERSY GGYIGADYHP NNVTLAKNDT GGNGGSGDQE SESWKDVLEA  360
CEASVALNSE GSTPSSVKGL LPGMQEDSNW SYSNQADQSA LLLPQELGSF EHPACYPELG  420
DPENNAEYSR IMDDEGIIRM PLQQEMRPTV SHKQEFTIQD VSPQWGYANE TTKVIIIGSF  480
LCDPTESTWS CMFGSVEVPF EIIKDGVIRC EAPPCGPGKV NLRITSGDGL SCSQIKEFEY  540
RDKPDTSCSR CSRDELFLLV RFVQTLLSDK KSNIEPDIDK LKKIKADDDE EWSHIIDTIL  600
DDTATPSSTV DWLLQKLLKD KLDAWLSSRS QDEDQTSCSL SKQEQGIIHM VAGLGFEWAL  660
HPILGLGVSV DFRDSNGWSA LHWAARYGRE KMVAALIASG ASAGAVTDPN AQDPAGKTAA  720
SIGASNGHKG LAGYLSEVAL TNHLSSLTLE ETEHSLGSAQ VQAEMIVNSI SGRSPPGNDD  780
PHSRAALRNV AQAAARIQAA FRAHSFRKRQ EREAAMAACY QEYGIYADIE GIAAMSKLAF  840
GNVKNYNSAA LSIQKKYRGY KGRKEFLAKR QKVVKIQAYV RGYQVRKHYK VICWAVGILD  900
KVVLRWRRKG VGLKGFRQDV ESREEESEDE DILKVFRKEK VDGAVNEAFS RVLSMTNSPD  960
ARQQYQRVLK RYCQTKAELG KTETLGTDGG DEDDDVLLDI ADMRYENLRT LP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:12218065}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127544.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892000.0AC189200.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB005J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127544.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLM4EYW50.0M4EYW5_BRARP; Uncharacterized protein
STRINGBra034007.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM64762642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]