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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_009127598.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 278aa MW: 31347.6 Da PI: 9.857 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_009127598.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 297.4 | 5.7e-91 | 1 | 278 | 1 | 301 |
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki..rernlalsekkaav............aerd........maflqrdkalaernka 73
md+dg +rn+gyy+++ +++ lg+ql+ si +r++k+ +n +++++++ + +rd m++ ++l++
XP_009127598.1 1 MDEDGLSNRNWGYYDQS-QFRPSLGFQLIPSIVDRNDKQflFPQNPNFITTNNGYcgggssssnvmsFPRDytasdapfMSY----SWLNQ---- 86
9**************99.********************99945555557777777566665555554444466665555555....77777.... PP
GAGA_bind 74 lverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
+rd+k++++l+++ s ++++ + ++ ++ lq +p +++e+ +++++ +q ++pk+kk++k +
XP_009127598.1 87 --HRDSKFFNNLPNNPS-NHHT----LLDPRAQPMQLLQI--------------------PKPEAGEVDESLKRRQCGGGQ-RADPKAKKERKLR 153
..999999999994443.1111....12222222222222....................222244577788888998555.5689999988888 PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqg 263
+ + +++++++ +ksi++v+ngv++D++ lPvPvCsCtG ++qCY+WG+GGWqSaCCtt++S+yPLP++tk+rgaRiagrKmSqg
XP_009127598.1 154 D--------NIVPRMQRERSPLRKSIEMVINGVTIDIGCLPVPVCSCTGLSQQCYRWGCGGWQSACCTTNVSMYPLPMNTKKRGARIAGRKMSQG 240
8........2334444566789************************************************************************* PP
GAGA_bind 264 afkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
afkk+LekL+a+G+d+s p+DLk+hWAkHGtnkfvtir
XP_009127598.1 241 AFKKVLEKLSADGFDFSSPIDLKSHWAKHGTNKFVTIR 278
*************************************8 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MDEDGLSNRN WGYYDQSQFR PSLGFQLIPS IVDRNDKQFL FPQNPNFITT NNGYCGGGSS 60
SSNVMSFPRD YTASDAPFMS YSWLNQHRDS KFFNNLPNNP SNHHTLLDPR AQPMQLLQIP 120
KPEAGEVDES LKRRQCGGGQ RADPKAKKER KLRDNIVPRM QRERSPLRKS IEMVINGVTI 180
DIGCLPVPVC SCTGLSQQCY RWGCGGWQSA CCTTNVSMYP LPMNTKKRGA RIAGRKMSQG 240
AFKKVLEKLS ADGFDFSSPI DLKSHWAKHG TNKFVTIR
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in petal vasculature, in anthers, in young rosette, in the lateral and primary roots, and in the gynobasal portion of the ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
