PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127639.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 316aa    MW: 34720.6 Da    PI: 4.3856
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127639.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2431.1e-13102150254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54 
                     +  GVr++k +g+W+AeIr+p        +r +lg+f t e+A++a+ + r+++ 
  XP_009127639.1 102 KPVGVRQRK-WGKWAAEIRHP-----IlkTRRWLGTFLTLEDAHQAYKKKRREYD 150
                     678*****9.**********8.....556999*******************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-7102150IPR001471AP2/ERF domain
PROSITE profilePS5103215.593102159IPR001471AP2/ERF domain
SMARTSM003807.8E-9102151IPR001471AP2/ERF domain
PRINTSPR003678.0E-5103114IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-12104149IPR016177DNA-binding domain
CDDcd000187.12E-17104142No hitNo description
Gene3DG3DSA:3.30.730.101.6E-16105147IPR001471AP2/ERF domain
PRINTSPR003678.0E-5125141IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MVAIRKQRVT KKPKSDNSLS SDPQETQVLR KVRIIVADPY ATDDSSSDEE EMIPRPRPVK  60
RIVREINFPL HSDSASPDST VTMSKRAGAA RFAASRAKLL NKPVGVRQRK WGKWAAEIRH  120
PILKTRRWLG TFLTLEDAHQ AYKKKRREYD ELLGIVDDPL PVSEDAKPEV SSSENSQCSG  180
SSTTTSLEQD ASSSSAKEEV MMKITTNDDD GVDLSEEVLF DFNFADLQIP EFIGDGGSMG  240
GGGGGNDLGL DFDCFFTDDQ LDDFGLLDDI SGFEESGPSA LPDFDFADVE LELAGSSFLD  300
QTSPLNMTCS MKSFAA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.198480.0bud| flower
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127639.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127639.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA273e-99EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLM4EYN10.0M4EYN1_BRARP; Uncharacterized protein
STRINGBra033923.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.27e-64ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]