PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127760.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32393.1 Da    PI: 5.7148
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127760.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41e-1778131356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ eq+++Le+ Fe  ++++ e++ +LA+ l L+ rq+ +WFqNrRa++k
  XP_009127760.1  78 KKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALCLQPRQIAIWFQNRRARWK 131
                     456899***********************************************9 PP
2HD-ZIP_I/II127.94.1e-4177169193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrl+ eqvk+LE++Fe  +kL+perK++lar+L lqprq+a+WFqnrRAR+ktkqlEkdy++Lkr++d+lk+en+ L++++++L++e+++
  XP_009127760.1  77 EKKRRLNMEQVKTLEKNFELGNKLDPERKMQLARALCLQPRQIAIWFQNRRARWKTKQLEKDYDTLKRQFDSLKAENDLLQTHNQKLQAEIMS 169
                     69**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-1958134IPR009057Homeodomain-like
SuperFamilySSF466899.84E-2066135IPR009057Homeodomain-like
PROSITE profilePS5007117.00673133IPR001356Homeobox domain
SMARTSM003896.3E-1676137IPR001356Homeobox domain
CDDcd000863.49E-1578134No hitNo description
PfamPF000464.8E-1578131IPR001356Homeobox domain
PROSITE patternPS000270108131IPR017970Homeobox, conserved site
PfamPF021832.9E-16133174IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSCNNGMSFF PSNFMIQPSY EDLPPSLSPL LPSCSIPQDL HGFASFLGKR SPVEGLEAGN  60
IMNGEEDYSD DGSQKGEKKR RLNMEQVKTL EKNFELGNKL DPERKMQLAR ALCLQPRQIA  120
IWFQNRRARW KTKQLEKDYD TLKRQFDSLK AENDLLQTHN QKLQAEIMSL RNREQTESIN  180
LNKETEGSCS NRSDNSSDNF RLDISTAVPS VDSTITGGHP PAQQTVGRHF FPPATATTTT  240
TTMQFFQNSS SGQSMVKEEN SISNMFCAMD DHSGFWPWLD QQQYN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125133RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.215690.0bud| root| silique
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127760.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3533110.0AK353311.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-34-O11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127760.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13-like
SwissprotQ8LC030.0ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A398AAB20.0A0A398AAB2_BRACM; Uncharacterized protein
TrEMBLM4CUI60.0M4CUI6_BRARP; Uncharacterized protein
STRINGBra007881.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26332770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-166HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]