PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127842.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 191aa    MW: 21718.6 Da    PI: 8.484
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127842.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-143881348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +++++Ed+l+++++++lG++ W++Ia +++ gRt+ +++ +w +yl
   XP_009127842.1 38 NFSKDEDDLILRLHALLGNR-WSLIAGRLP-GRTDTEIRIHWETYL 81
                     79******************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-152090IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-202885IPR009057Homeodomain-like
PROSITE profilePS5129423.5753185IPR017930Myb domain
SMARTSM007173.1E-143583IPR001005SANT/Myb domain
PfamPF002491.4E-133881IPR001005SANT/Myb domain
CDDcd001672.12E-113881No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MNIVCVRALY PPSRLLHRAE RCRVGGRNYE KPELKQSNFS KDEDDLILRL HALLGNRWSL  60
IAGRLPGRTD TEIRIHWETY LKRKLMKMGI DPTNHRLYHH ANYISRQYLN SSHKKLETDI  120
ISDQSSSVSE SCDMRMLPVS ISTNCYDDSA SSSAGHSHLP DLNISLIPAE TVVSWPVCGL  180
QESNSNGSTR Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-14198542108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127842.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN3791010.0JN379101.1 Brassica napus myb-like transcription factor 2 (MYBL2-4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127842.21e-140PREDICTED: myb-related protein 308
TrEMBLI6T5P31e-139I6T5P3_BRARO; Myb-like transcription factor 2
TrEMBLM4CUR21e-139M4CUR2_BRARP; Uncharacterized protein
STRINGBra007957.1-P1e-140(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71030.19e-77MYB-like 2