PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009127854.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

bHLH

Protein Properties

Length: 238aa MW: 26654.3 Da PI: 6.5112

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009127854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	18.8	3e-06	63	116	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ +++Er RR r+ ++ +L +llP s+ ++kK +i ++v YI +L XP_009127854.1 63 KKQERSANERLRRLRLHASYLTLGTLLPDHSSSSKKKWCAPSIMDRVVTYIPKL 116 5778899********************87888889************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.9E-9	57	129	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.83E-4	60	121	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-7	62	137	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.096	62	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0013	68	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 238 aa Download sequence Send to blast
MDNHQTFASS LLDVDDLLHI PAETIGASGE KDDTCPIQSE SKGKEVVVVL HDQDAHGPSS 60 VAKKQERSAN ERLRRLRLHA SYLTLGTLLP DHSSSSKKKW CAPSIMDRVV TYIPKLHNEV 120 EELTLRKQKL VEAIESRRSR VLVPQDPHNR TISVLELEGS GGEVVVQISM KRVKEDEFSN 180 LIHVMEMQGF SILSASTSLV CRDQRVVCYN FHGKIDEKPS EGEDYITVLK NNIISTLS

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009127854.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009127854.1	1e-176	PREDICTED: uncharacterized protein LOC103852708 isoform X1
Swissprot	F4I8F9	1e-85	BH160_ARATH; Transcription factor bHLH160
TrEMBL	M4CUS3	1e-174	M4CUS3_BRARP; Uncharacterized protein
STRING	Bra007968.1-P	1e-175	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10558	22	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71200.1	5e-88	bHLH family protein

Publications ? help Back to Top
Yan J, et al. Arabidopsis Pollen Fertility Requires the Transcription Factors CITF1 and SPL7 That Regulate Copper Delivery to Anthers and Jasmonic Acid Synthesis. Plant Cell, 2017. 29(12): p. 3012-3029 [PMID:29114014]