PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127864.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 148aa    MW: 16477.5 Da    PI: 7.6658
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127864.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2513.6e-161362255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    +ykG+r++k +g+Wv+eIr+p++   r r +lg+f tae+Aa a++ a  +l+ 
  XP_009127864.1 13 KYKGIRRRK-WGKWVSEIRVPRT---RERLWLGSFSTAEGAAVAHDVAFFCLHR 62
                    8*****998.**********965...4*********************999985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.63E-251276No hitNo description
Gene3DG3DSA:3.30.730.102.1E-241374IPR001471AP2/ERF domain
PROSITE profilePS5103221.1271374IPR001471AP2/ERF domain
SMARTSM003803.4E-291380IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-161374IPR016177DNA-binding domain
PfamPF008473.2E-81360IPR001471AP2/ERF domain
PRINTSPR003675.1E-91425IPR001471AP2/ERF domain
PRINTSPR003675.1E-93652IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MDSRDAGETH QAKYKGIRRR KWGKWVSEIR VPRTRERLWL GSFSTAEGAA VAHDVAFFCL  60
HRPSSLGEEV FNFPHLLQPS LASYTSPKSI QKAASDAGMA IDAGFAVKKD GVNGGGEYRL  120
STANMAEYSE REALSISVYD YLLDDDRM
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127864.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127864.11e-107PREDICTED: ethylene-responsive transcription factor ERF020-like
RefseqXP_013710635.11e-107ethylene-responsive transcription factor ERF020-like
SwissprotQ9C9I83e-73ERF20_ARATH; Ethylene-responsive transcription factor ERF020
TrEMBLM4CUS91e-106M4CUS9_BRARP; Uncharacterized protein
STRINGBra007974.1-P1e-107(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38652860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71520.11e-75ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]