PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127865.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 182aa    MW: 20080.4 Da    PI: 6.1121
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127865.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.17.8e-172271255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+Wv+eIr+p +   + r++lg+f t+e+Aa a++ a+  ++g
  XP_009127865.1 22 AYRGVRKRK-WGKWVSEIREPGT---KNRIWLGSFETPEMAATAYDGAAFHFRG 71
                    69****999.**********833...59********************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.85E-222180IPR016177DNA-binding domain
CDDcd000181.97E-312181No hitNo description
Gene3DG3DSA:3.30.730.102.6E-312280IPR001471AP2/ERF domain
SMARTSM003806.2E-372285IPR001471AP2/ERF domain
PfamPF008472.8E-102271IPR001471AP2/ERF domain
PROSITE profilePS5103223.1562279IPR001471AP2/ERF domain
PRINTSPR003678.3E-102334IPR001471AP2/ERF domain
PRINTSPR003678.3E-104561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MSGHSNSTNN TRSDGQAGIP SAYRGVRKRK WGKWVSEIRE PGTKNRIWLG SFETPEMAAT  60
AYDGAAFHFR GREARLNFPE LASSLPRPVD SSSDSVRMAA HEAALCLRTE PVESAMQVDT  120
SSSSNAGPTM VRLSPREIQA INESTMGSPT MMMHSTYDSM GFGYDMGMNV WDTYLTDSLW  180
DP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-172379360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-172379663ATERF1
3gcc_A7e-172379663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127865.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0161621e-151AC016162.5 Arabidopsis thaliana chromosome 1 BAC F3I17 genomic sequence, complete sequence.
GenBankAC0161631e-151AC016163.6 Arabidopsis thaliana chromosome 1 BAC F26A9 genomic sequence, complete sequence.
GenBankBT0107641e-151BT010764.1 Arabidopsis thaliana At1g71450 gene, complete cds.
GenBankBT0117901e-151BT011790.1 Arabidopsis thaliana At1g71450 mRNA, complete cds.
GenBankCP0026841e-151CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127865.11e-134PREDICTED: ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I21e-103ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLM4CUT01e-132M4CUT0_BRARP; Uncharacterized protein
STRINGBra007975.1-P1e-133(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.11e-105ERF family protein