PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127890.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 374aa    MW: 39098.2 Da    PI: 8.9956
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127890.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.47.5e-40531822105
             TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec........eaesssssas..... 83 
                     +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++                ++     
  XP_009127890.1  53 PAAKKPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIASTGTGTIPANFStlnatlrgG-------GGstifa 140
                     5789************************************************************88888776432222221.......1122221 PP

             TCP  84 ..nsssg....................kaaksaa.kskksqksaa 105
                       +   +                    +++++a+  +  + +++a
  XP_009127890.1 141 qsS---KsspfhstgmslyedsngtngSSSSAAKlLNAATAAQNA 182
                     111...122344444444444444444333333324444444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3459162IPR005333Transcription factor, TCP
PROSITE profilePS5136927.89259113IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MDQNSHDRPT AEAGLQLNST ENPSPGRSVH FAGGATSSST STSSGTALAV VKPAAKKPSK  60
DRHTKVDGRG RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IASTGTGTIP  120
ANFSTLNATL RGGGGSTIFA QSSKSSPFHS TGMSLYEDSN GTNGSSSSAA KLLNAATAAQ  180
NAAVFGFHHQ GYQPIMSAER NPPTLGKPYR EDYFKESEPS GSSQKPGQFQ EQEMGPGPGM  240
GRGTANVVPQ PMWAVAPGTT NGGSAFWMLP MSGSGGREQM QQQPGHQMWA FNPGSYPVGT  300
GRVVTAPMGS MMLGGQQLGL GVAEGNMAAA MRGSRGGGGD GLAMTLDQHQ HQHHQQHQEP  360
NQSQASENGG DDKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.221330.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00228DAPTransfer from AT1G72010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127890.10.0PREDICTED: transcription factor TCP22-like
SwissprotQ9C7G40.0TCP22_ARATH; Transcription factor TCP22
TrEMBLA0A3P6ALH20.0A0A3P6ALH2_BRACM; Uncharacterized protein
TrEMBLM4CUV60.0M4CUV6_BRARP; Uncharacterized protein
STRINGBra008001.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70532441
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72010.11e-135TCP family protein
Publications ? help Back to Top
  1. Wu JF, et al.
    LWD-TCP complex activates the morning gene CCA1 in Arabidopsis.
    Nat Commun, 2016. 7: p. 13181
    [PMID:27734958]
  2. Dong H, et al.
    Ubiquitylation activates a peptidase that promotes cleavage and destabilization of its activating E3 ligases and diverse growth regulatory proteins to limit cell proliferation in Arabidopsis.
    Genes Dev., 2017. 31(2): p. 197-208
    [PMID:28167503]