PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009127962.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 185aa    MW: 21098.4 Da    PI: 8.0993
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009127962.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260122.62.1e-38191181100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++r+kC+++C+lapyfp+e++++f n+hklFG+sn++k++k ++e +r++am+ l+++A+arardPv G+++++l+l++++++++ael+
  XP_009127962.1  19 ACAACKYQRKKCTEHCILAPYFPQEKQNQFLNAHKLFGVSNITKFIKGVEECQRDIAMTNLMFHANARARDPVWGVCKIMLDLKNKIACTQAELN 113
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     l++++
  XP_009127962.1 114 LIHQQ 118
                     *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575120No hitNo description
PROSITE profilePS5089124.20718119IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3519116IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MSLSKFHGGS SSCSSSATAC AACKYQRKKC TEHCILAPYF PQEKQNQFLN AHKLFGVSNI  60
TKFIKGVEEC QRDIAMTNLM FHANARARDP VWGVCKIMLD LKNKIACTQA ELNLIHQQNL  120
AMCRTIALQQ QFGCYSYGDL LEQGDEYLNI DGHVHQKQSV LNYEMFMEMP IKLEKEKVSM  180
DTRMQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-2591201112LOB family transfactor Ramosa2.1
5ly0_B3e-2591201112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009127962.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127962.11e-139PREDICTED: LOB domain-containing protein 7
SwissprotQ9SSM94e-63LBD7_ARATH; LOB domain-containing protein 7
TrEMBLA0A291LR361e-137A0A291LR36_BRARR; Transcription factor LBD7
TrEMBLM4CV171e-137M4CV17_BRARP; Uncharacterized protein
STRINGBra008062.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM154661417
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72980.15e-58LOB domain-containing protein 7