PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128008.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family EIL
Protein Properties Length: 546aa    MW: 61575.8 Da    PI: 5.3421
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128008.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN34241.5e-129333591327
                     XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
            EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 
                     e+l++rmwkd+++lkr+ker+k+  ++kea       +k+++qa+rkkmsraQDgiLkYMlk mevc+++GfvYgiipekgkpv+g+sd++raWW
  XP_009128008.1  33 EDLERRMWKDRVRLKRIKERTKSGSQAKEA------PKKISDQAQRKKMSRAQDGILKYMLKLMEVCKVRGFVYGIIPEKGKPVSGSSDNIRAWW 121
                     89********************97655554......569******************************************************** PP

                     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT- CS
            EIN3  96 kekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdq 190
                     kekv+fd+ngpaai+ky+ ++l++++++++    ++++  l++lqD+tlgSLLs+lmqhcdppqr++plekg++pPWWPtG+e+ww +lgl k+q
  XP_009128008.1 122 KEKVKFDKNGPAAIAKYEEECLAFGKSDRN----RNSQFVLQDLQDATLGSLLSSLMQHCDPPQRKYPLEKGTPPPWWPTGDEEWWVKLGLGKSQ 212
                     ***********************9966655....78999******************************************************** PP

                     -.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.....XXXX...XXXXXXXX CS
            EIN3 191 gtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.....slrk...qspkvtls 277
                     + ppy+kphdlkk+wkv+vLtavi+hm p++++i++++rqsk+lqdkm+akes+++l+vlnqee+++++ s+++      ++r+   ++ +  ++
  XP_009128008.1 213 S-PPYRKPHDLKKMWKVGVLTAVINHMLPDVAKIKRHVRQSKCLQDKMTAKESAIWLAVLNQEESLIQQNSSDNGtsnvtEIRRrgnNNAENMVN 306
                     9.9*********************************************************************94444577333344577778889 PP

                     XXXXXXXXXXXXXX.X...XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.... CS
            EIN3 278 ceqkedvegkkeskik...hvqavkttagfpvvrkrkkkpsesakvsskevsr 327
                     ++ ++dv+g++e + +   ++q v+ +++++ +r+rk+++s s +vs +e  +
  XP_009128008.1 307 SDGDYDVDGTEEASGSltaTSQPVRDQDKAKKQRRRKRPRSISGTVSRQEEEQ 359
                     999*****777766542115666666667777777777777776666665433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-12433275No hitNo description
Gene3DG3DSA:1.10.3180.105.3E-70150283IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.22E-59156278IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MSVADIRMEN EPDDIASDNV AEIDVSDEDI DAEDLERRMW KDRVRLKRIK ERTKSGSQAK  60
EAPKKISDQA QRKKMSRAQD GILKYMLKLM EVCKVRGFVY GIIPEKGKPV SGSSDNIRAW  120
WKEKVKFDKN GPAAIAKYEE ECLAFGKSDR NRNSQFVLQD LQDATLGSLL SSLMQHCDPP  180
QRKYPLEKGT PPPWWPTGDE EWWVKLGLGK SQSPPYRKPH DLKKMWKVGV LTAVINHMLP  240
DVAKIKRHVR QSKCLQDKMT AKESAIWLAV LNQEESLIQQ NSSDNGTSNV TEIRRRGNNN  300
AENMVNSDGD YDVDGTEEAS GSLTATSQPV RDQDKAKKQR RRKRPRSISG TVSRQEEEQR  360
NILPDMYHVD ASLLGHNING THHHQEGVLE PNIALGAEEN GLEVIVPEFD NNYTYFPPVS  420
EQAMMPVDER PMLYGPNPNQ ELQFGSGYNF YNPSAVLVNN QEQDLIHTRI EMNAPRSNGF  480
EASVGVGAPD GLHEDGVAGR DLPPQFQRDS NILSPFNDLA AFDSSTFYSG FDSYGAFDDD  540
FSWFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-861552869140ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128008.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A078I9Z10.0A0A078I9Z1_BRANA; BnaA02g16550D protein
TrEMBLA0A398ABY10.0A0A398ABY1_BRACM; Uncharacterized protein
STRINGBra008110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]