PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128038.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 616aa    MW: 70847.1 Da    PI: 4.7473
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128038.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025587606221
                     EETTTTEEESSHHHHHHHHH CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                     +C  Cg+ F ++s L +Hi 
  XP_009128038.1 587 ECDRCGEEFESRSKLFKHIA 606
                     5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1103.1E-22589IPR001623DnaJ domain
SuperFamilySSF465656.15E-226111IPR001623DnaJ domain
SMARTSM002712.5E-181073IPR001623DnaJ domain
PROSITE profilePS5007618.4711181IPR001623DnaJ domain
CDDcd062571.06E-141170IPR001623DnaJ domain
PfamPF002264.2E-191278IPR001623DnaJ domain
PRINTSPR006255.1E-131331IPR001623DnaJ domain
PRINTSPR006255.1E-133146IPR001623DnaJ domain
PRINTSPR006255.1E-135373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576679.33E-15300350No hitNo description
SMARTSM004515.9E-8305339IPR003604Zinc finger, U1-type
PfamPF121713.4E-10307333IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82308332IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280310332IPR007087Zinc finger, C2H2
SMARTSM003553.6586610IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.785586615IPR007087Zinc finger, C2H2
PROSITE patternPS000280588610IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 616 aa     Download sequence    Send to blast
MASSSRTEKR CLYEILDVNK ESSPEEIRSS YRRLALQRHP DKLIKAGGIS EADATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADQG SAGGSKSGGM PGGSVPDLFA FFSTSVYSGY  120
SDTGKGFYKV YFDVFNSVYL NEIKFARTLG LSMDSVREAP IMGNLESPYS QVTAFYNYWL  180
GFSTVMDFCW VDEYDTMAGP NRRVRRKMEE ENKKVRKKAK REYNETVRGL AAFVKKRDKR  240
VVDMMVKKSA EMELKKAEER ERKKRMEKER LERAMSYEEP DWAKAQDEEE EEVEEDGGDD  300
GKKKSEQLYC IVCSKKFKSE KQWKNHEQSK KHKEKVAELR ETFSDVEEEE EEIDEIPETV  360
EDLEGLNMEE EDIEEEVVGE AEETEDEYFM AEEDVKGSSE SEDEDVDDDE LFLLKKMVEK  420
NKRKNVVSRE EDEVQVEIES DGEFDNQKST TGRNRKGKKE RNKLNAGKDI TDDANKTQIA  480
MDDGNNSDDN VNASDSASGT VEESQKDETD PMEYDNRKST GRRRRSKKGK DKSSEADDTT  540
QKVMEETRSE TLEDRSEYIE HKKAPRSKKS TRGMKSKGTS KKASNNECDR CGEEFESRSK  600
LFKHIADTGH ATLKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128038.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A398AHJ30.0A0A398AHJ3_BRACM; Uncharacterized protein
STRINGBra008143.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-176DNAJ heat shock N-terminal domain-containing protein