PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128086.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ZF-HD
Protein Properties Length: 294aa    MW: 32284.9 Da    PI: 8.5822
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128086.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.23.4e-3267122258
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++vrY+eClkNhAa++Gg + DGCgEfmps geegt +al+CaAC+CHRnFHR+ev+
  XP_009128086.1  67 TTVRYRECLKNHAANVGGSVHDGCGEFMPS-GEEGTLEALRCAACDCHRNFHRKEVD 122
                     689**************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257747.0E-2668122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.8E-2969121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-2970121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.13571120IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.79E-19213285IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-30218285IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-29224280IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDMRSHEMIE RRSDDNGNNG AGNISSIITN EDNCNGNNNN NTRVSCNSQT LDHHQSKSSS  60
ISAAAKTTVR YRECLKNHAA NVGGSVHDGC GEFMPSGEEG TLEALRCAAC DCHRNFHRKE  120
VDGVGSSAHH HRHHHQYGGG GGRRPPPPNM MLNPLMLPPP PNYAQMHHHK YGMSPPSGMV  180
TPMSVAYGGG GGGAESSSED LNMYGQSSGE HGGGATVGQM GFSKKRFRTK FTTEQKERMM  240
EFAEKLGWRM NKQDEEELKR FCNDIGVKRQ VFKVWMHNNK SNAKKPTTTT PGTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-212252821875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.238450.0flower
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Binds DNA at 5'-ATTA-3' consensus promoter regions. Regulates floral architecture and leaf development. Regulators in the abscisic acid (ABA) signal pathway that confers sensitivity to ABA in an ARF2-dependent manner. {ECO:0000269|PubMed:16428600, ECO:0000269|PubMed:21059647, ECO:0000269|PubMed:21779177}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128086.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and ARF2. {ECO:0000269|PubMed:21779177}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3532741e-180AK353274.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-24-B06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128086.10.0PREDICTED: zinc-finger homeodomain protein 5-like isoform X1
RefseqXP_013693184.10.0zinc-finger homeodomain protein 5-like isoform X1
RefseqXP_018511689.10.0PREDICTED: zinc-finger homeodomain protein 5-like isoform X1
RefseqXP_022558735.10.0zinc-finger homeodomain protein 5-like isoform X1
SwissprotQ9FRL51e-118ZHD5_ARATH; Zinc-finger homeodomain protein 5
TrEMBLM4CVD80.0M4CVD8_BRARP; Uncharacterized protein
STRINGBra008185.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72792543
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.11e-108homeobox protein 33