PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128106.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family ERF
Protein Properties Length: 198aa    MW: 21689.7 Da    PI: 5.5963
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128106.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-193281255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                     ykGVr++  +g+WvAeIr+p   + r +r +lg+f+ta eAa a++ a++kl+g
  XP_009128106.1 32 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDTAREAALAYDSAARKLYG 81
                    69****999.**********8...3.35************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.76E-313191No hitNo description
SMARTSM003805.9E-353295IPR001471AP2/ERF domain
PfamPF008477.1E-143281IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-313290IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-223291IPR016177DNA-binding domain
PROSITE profilePS5103222.0623289IPR001471AP2/ERF domain
PRINTSPR003672.9E-103344IPR001471AP2/ERF domain
PRINTSPR003672.9E-105571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MVGANKKQRT VHASSRKGCM RGKGGPDNAS CTYKGVRQRT WGKWVAEIRE PNRGARLWLG  60
TFDTAREAAL AYDSAARKLY GSEAHLNLPE SLRSYPETVL PGTQASHTPS SNTGGKSSDS  120
INEESPSSSN EMSSWGTTEE ISWEHMNADL PVTDDSSIWE EATMSLGFPW VHEGDDISPF  180
STCINGGYSN WDSFHSPL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-193394668ATERF1
3gcc_A7e-193394668ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128106.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128106.11e-146PREDICTED: dehydration-responsive element-binding protein 2D-like
RefseqXP_013718580.11e-146dehydration-responsive element-binding protein 2D
SwissprotQ9LQZ21e-113DRE2D_ARATH; Dehydration-responsive element-binding protein 2D
TrEMBLA0A078HN951e-145A0A078HN95_BRANA; BnaA02g17250D protein
TrEMBLA0A3P6A5U91e-145A0A3P6A5U9_BRACM; Uncharacterized protein
TrEMBLM4CVF31e-145M4CVF3_BRARP; Uncharacterized protein
STRINGBra008200.1-P1e-146(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53992648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.11e-111ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]