PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128222.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 841aa    MW: 95314.7 Da    PI: 4.4226
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128222.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox314.2e-10459503953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +  +e L ++F +n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  XP_009128222.1 459 RAAVEKLRQVFVENELPSKAVRDSLSKELSLDPEKVSKWFKNARY 503
                     567899*************************************97 PP
2PHD41.82.5e-14190245151
                     SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_009128222.1 190 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 245
                     6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579034.94E-14182247IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.4E-12186245IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.976188245IPR019787Zinc finger, PHD-finger
PfamPF006281.7E-11190245IPR019787Zinc finger, PHD-finger
SMARTSM002497.7E-10190243IPR001965Zinc finger, PHD-type
CDDcd155041.12E-31190242No hitNo description
PROSITE patternPS013590191242IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.4E-11436502IPR009057Homeodomain-like
PROSITE profilePS5007112.455448508IPR001356Homeobox domain
SuperFamilySSF466894.71E-10450514IPR009057Homeodomain-like
SMARTSM003896.7E-11450512IPR001356Homeobox domain
CDDcd000861.52E-8451503No hitNo description
PfamPF000461.4E-7459503IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 841 aa     Download sequence    Send to blast
MKKSVTKGRI EKETDKACVS VEKAESTLLS SLVKKGKQTS NKRKYTKRKS EEEISSKSNK  60
RKYSRCNEEE EEEKGKKTRK RKRKRQQKGN KVEEEEVDEA LRLQRRTRYL LIKMKMQQNL  120
IDAYAAEGWK GQSREKIRPD KELERARKHI FDCKLGLRDA IHQLDLLSSV GRMEEKVMAP  180
DGSIHHDHIF CAECNSREAF PDNDIILCDG TCNRAFHQKC LDPPLETESI PPGDQGWFCK  240
FCDCKIEIID AMNAQIGTQF SVDSNWQDIF NEEASLPVGC EATLNKEADW PSDDSEDGDY  300
DPETKDKSSS KSDSGGGGGD NDGESVSSSS VSLASDGVAL STGSWEGGNM VDSEETSNEE  360
TVCGPRQRKT VDYTKLYHEM FGKDAVLQEQ GSEDEDWGPS DRRKRKKESD GASTLVAVCE  420
NSKKDQDVKE TPEQTQHSER DSVSVEGKVG KRPMFRIPRA AVEKLRQVFV ENELPSKAVR  480
DSLSKELSLD PEKVSKWFKN ARYMALRNRK TESMKQPEGS KAGSGDSGRE AVLVEKNTER  540
NETRCIVDES VMEENTETNE TQGSVDETTK DKNTGANENH ETLDQTVTEE NTVTNEVQDT  600
LDEPVMEENS GTNEFQDTLD GTVMEENTEA PKIQDTLVET FMEKNSETNE IQDPTDETVM  660
EYTETKEVQD TVDVENNSET NEMQGTMEIN EIHDDTMDET VPLRYDDFTD QTTVSACNDK  720
QEETEDANDS FPTPPEDESQ QYLEQKDSSF ALVPHEELTS EMSVETPIED KEAESQLKEE  780
EELEALMEVL CRAENKLMDV THRLERFRTP KGRKKLSKSS SCLSEEDYVV YVPTAEIKVK  840
R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15981KRKYSRCNEEEEEEKGKKTRKRK
27583KKTRKRKRK
37883RKRKRK
47884RKRKRKR
5402406RKRKK
6402407RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128222.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128222.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM4D3U90.0M4D3U9_BRARP; Uncharacterized protein
STRINGBra011153.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]