PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128228.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family HB-PHD
Protein Properties Length: 669aa    MW: 75049.4 Da    PI: 4.0465
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128228.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.43.2e-10287331953
                     HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
        Homeobox   9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                     +  +e L ++F +n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  XP_009128228.1 287 RAAVEKLRQVFVENELPSKAVRDSLSKELSLDPEKVSKWFKNARY 331
                     567899*************************************97 PP
2PHD42.21.9e-141873151
                    SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD  1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51
                    +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e++p g   w+C+ C++k
  XP_009128228.1 18 FCAECNSreAFPDNDIILCDgTCNRAFHQKCLDPPLETESIPPGdqGWFCKFCDCK 73
                    6999***55455********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.7E-141075IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.8E-121473IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.9761673IPR019787Zinc finger, PHD-finger
CDDcd155044.63E-311870No hitNo description
SMARTSM002497.7E-101871IPR001965Zinc finger, PHD-type
PfamPF006281.3E-111873IPR019787Zinc finger, PHD-finger
PROSITE patternPS0135901970IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.601.0E-11264330IPR009057Homeodomain-like
PROSITE profilePS5007112.455276336IPR001356Homeobox domain
SuperFamilySSF466893.34E-10278342IPR009057Homeodomain-like
SMARTSM003896.7E-11278340IPR001356Homeobox domain
CDDcd000862.16E-9279340No hitNo description
PfamPF000461.1E-7287331IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MEEKVMAPDG SIHHDHIFCA ECNSREAFPD NDIILCDGTC NRAFHQKCLD PPLETESIPP  60
GDQGWFCKFC DCKIEIIDAM NAQIGTQFSV DSNWQDIFNE EASLPVGCEA TLNKEADWPS  120
DDSEDGDYDP ETKDKSSSKS DSGGGGGDND GESVSSSSVS LASDGVALST GSWEGGNMVD  180
SEETSNEETV CGPRQRKTVD YTKLYHEMFG KDAVLQEQGS EDEDWGPSDR RKRKKESDGA  240
STLVAVCENS KKDQDVKETP EQTQHSERDS VSVEGKVGKR PMFRIPRAAV EKLRQVFVEN  300
ELPSKAVRDS LSKELSLDPE KVSKWFKNAR YMALRNRKTE SMKQPEGSKA GSGDSGREAV  360
LVEKNTERNE TRCIVDESVM EENTETNETQ GSVDETTKDK NTGANENHET LDQTVTEENT  420
VTNEVQDTLD EPVMEENSGT NEFQDTLDGT VMEENTEAPK IQDTLVETFM EKNSETNEIQ  480
DPTDETVMEY TETKEVQDTV DVENNSETNE MQGTMEINEI HDDTMDETVP LRYDDFTDQT  540
TVSACNDKQE ETEDANDSFP TPPEDESQQY LEQKDSSFAL VPHEELTSEM SVETPIEDKE  600
AESQLKEEEE LEALMEVLCR AENKLMDVTH RLERFRTPKG RKKLSKSSSC LSEEDYVVYV  660
PTAEIKVKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234RKRKK
2230235RKRKKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128228.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128222.10.0PREDICTED: pathogenesis-related homeodomain protein-like isoform X1
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLM4D3U90.0M4D3U9_BRARP; Uncharacterized protein
STRINGBra011153.1-P0.0(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]