PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128229.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 260aa    MW: 29621.9 Da    PI: 9.2681
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128229.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.84.5e-49111342128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 
                     ppGfrFhPtdeelv  yL++k++++++ +  +i+e+d+y+++ wdLp ++  +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk++ +  
  XP_009128229.1  11 PPGFRFHPTDEELVLMYLCRKCASQPIAA-PIITELDLYRYDAWDLPDMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGR-- 102
                     9*************************999.88***************6666689*************************************98.. PP

             NAM  97 gelvglkktLvfykgrapkgektdWvmheyrl 128
                      + vg+kk Lvfy+g+ p+gekt+W+mheyrl
  XP_009128229.1 103 PKPVGIKKALVFYSGKPPRGEKTNWIMHEYRL 134
                     789***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-597160IPR003441NAC domain
PROSITE profilePS5100558.07210160IPR003441NAC domain
PfamPF023651.0E-2611134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MVKAGADLQF PPGFRFHPTD EELVLMYLCR KCASQPIAAP IITELDLYRY DAWDLPDMAL  60
YGEKEWYFFS PRDRKYPNGS RPNRAAGTGY WKATGADKPI GRPKPVGIKK ALVFYSGKPP  120
RGEKTNWIMH EYRLADVDRS VRKGNSLRLD DWVLCRIYNK KGVIEKRRSE VANGHVMAPV  180
MLNFDKPELI GGGSSCSDQR VVSPEFRCEA KTEPSRWSNA LEVPFNYVDA IADNEIVSRL  240
LGGNQMWSTL DPLVVRQRTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-7641669174Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.55500.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in germinating seeds, roots, leaf veins, open flowers and silique stalks. {ECO:0000269|PubMed:27388337}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128229.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269|PubMed:26518251, ECO:0000269|PubMed:27388337}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2458860.0AY245886.1 Brassica napus NAC-domain protein 14 (NAC14) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128229.10.0PREDICTED: NAC domain-containing protein 2
SwissprotQ9CAR01e-152NAC32_ARATH; NAC transcription factor 32
TrEMBLA0A219UXT90.0A0A219UXT9_SINAL; NAC domain protein 14
TrEMBLA0A219UXW90.0A0A219UXW9_BRAJU; NAC domain protein 14
TrEMBLM4CVR20.0M4CVR2_BRARP; Uncharacterized protein
TrEMBLQ7Y1A50.0Q7Y1A5_BRANA; BnaA02g18390D protein
STRINGBra008309.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19028276
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.11e-154NAC domain containing protein 32
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y
    Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress.
    Plant Cell, 2014. 26(12): p. 4656-79
    [PMID:25549671]
  3. Takasaki H, et al.
    SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence.
    Plant J., 2015. 84(6): p. 1114-23
    [PMID:26518251]
  4. Mahmood K,El-Kereamy A,Kim SH,Nambara E,Rothstein SJ
    ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence in Arabidopsis thaliana.
    Plant Cell Physiol., 2016. 57(10): p. 2029-2046
    [PMID:27388337]
  5. Allu AD,Brotman Y,Xue GP,Balazadeh S
    Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection.
    EMBO Rep., 2016. 17(11): p. 1578-1589
    [PMID:27632992]
  6. Mahmood K,Xu Z,El-Kereamy A,Casaretto JA,Rothstein SJ
    The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses.
    Front Plant Sci, 2016. 7: p. 1548
    [PMID:27790239]
  7. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]