PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128406.1

Common Name

WRKY64

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

WRKY

Protein Properties

Length: 257aa MW: 29379.4 Da PI: 4.8246

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128406.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	65.8	7.1e-21	101	162	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 l+Dg++WrKYGqK++k s + r YYrC++a +C++kk+ ++ ++ p+v +tY g+H ++ XP_009128406.1 101 LNDGFSWRKYGQKKIKASSHQRCYYRCAYAkdrNCNAKKREQQIQDSPSVYRTTYVGKHICD 162 58*************************99999***********************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.5E-21	96	162	IPR003657	WRKY domain
PROSITE profile	PS50811	19.726	96	164	IPR003657	WRKY domain
SuperFamily	SSF118290	3.53E-21	98	163	IPR003657	WRKY domain
SMART	SM00774	8.0E-31	101	163	IPR003657	WRKY domain
Pfam	PF03106	9.2E-21	102	161	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MFHGADKAVE ALLRGQXSAN LLKTVLEHRR TSSVSIEPLF DTLLDSFSFA ISLFASSNTQ 60 PHRDSSQCKA TPGTARKSSK NNSNEEECLE QYSHDSPTPL LNDGFSWRKY GQKKIKASSH 120 QRCYYRCAYA KDRNCNAKKR EQQIQDSPSV YRTTYVGKHI CDVNVFSEPD DDIANGSKMI 180 RFDKMDQAMP DSVMPRLAPV EQQAITIEED TDQIMNLEFD INEFLVDDDQ LWEYQFPSFS 240 PGFLDDLSEF DHNPFLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-15	101	161	8	68	OsWRKY45
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128406.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF430070	0.0	KF430070.1 Brassica rapa WRKY transcription factor 64 (WRKY64) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001288940.1	0.0	probable WRKY transcription factor 63
Refseq	XP_013719207.1	0.0	probable WRKY transcription factor 64 isoform X1
Swissprot	Q93WV7	3e-82	WRK67_ARATH; Probable WRKY transcription factor 67
TrEMBL	V5RF92	0.0	V5RF92_BRACM; WRKY transcription factor 64
STRING	Bo2g095820.1	1e-143	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5609	18	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66550.2	6e-78	WRKY DNA-binding protein 67

Link Out ? help Back to Top
Entrez Gene	103853234

Publications ? help Back to Top
Tang J, et al. Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis). BMC Plant Biol., 2013. 13: p. 188 [PMID:24267479]