PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128489.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family MYB_related
Protein Properties Length: 307aa    MW: 35001.2 Da    PI: 9.6652
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128489.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-164183145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     + +WT eE+++lv+a +  G++ W+ Ia+ ++ gRt++++k++w+
   XP_009128489.1 41 KTPWTREEELILVQAQRDQGNK-WAEIAKLLP-GRTENNIKNHWN 83
                     579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.96E-193092IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-203389IPR009057Homeodomain-like
PROSITE profilePS5129422.6283690IPR017930Myb domain
SMARTSM007177.9E-154088IPR001005SANT/Myb domain
PfamPF002495.2E-144183IPR001005SANT/Myb domain
CDDcd001674.47E-114383No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MSLFRMRSLN GPKYPSNSLV ALARNVVKGS IYNHLNPTIE KTPWTREEEL ILVQAQRDQG  60
NKWAEIAKLL PGRTENNIKN HWNCSLKRRS EHLVTSSPLS GYGPCGYESS FFNQSNMMEI  120
KKAAKSPQRD SLELTLEPMN WRNTSSSINS LKGDEESKIS SSLESDWLRR NSKVEITITP  180
SSDDHHHKNV WLTPQLTTPS CVKVPLSPET PQSSSAGQEV REIIGRWKMA ASTFENTPSI  240
ISRRRSPASR RKQENDSPFD RCPRTLLSSE EELSVSNSSS SSSFTHDTQQ QLFRFKTLER  300
RLEFDFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-20138921104MYB PROTO-ONCOGENE PROTEIN
1mse_C9e-20328947104C-Myb DNA-Binding Domain
1msf_C9e-20328947104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128489.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018512217.10.0PREDICTED: LOW QUALITY PROTEIN: myb-related protein 315
SwissprotQ9SPN37e-61MB3R2_ARATH; Transcription factor MYB3R-2
TrEMBLM4CWC50.0M4CWC5_BRARP; Uncharacterized protein
STRINGBra008522.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16672887
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00540.28e-49myb domain protein 3r2
Publications ? help Back to Top
  1. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]