PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128881.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 300aa MW: 34516.6 Da PI: 5.2504

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.2	5.5e-52	12	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yLk+kveg ++el evi+ +d+yk++Pw+Lp k + +++ ew+fF++rdkky++g r+nr tk+gyWkatgkd++++ XP_009128881.1 12 LPPGFRFHPTDEELIDYYLKRKVEGLEIEL-EVIPVIDLYKFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKIT 105 79**************************.99**********96435556888********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s+++++vg +ktLvfykgra g +t+W+mheyrl XP_009128881.1 106 SRSSSTVGYRKTLVFYKGRALLGDRTTWLMHEYRL 140 *******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-59	6	165	IPR003441	NAC domain
PROSITE profile	PS51005	57.838	12	165	IPR003441	NAC domain
Pfam	PF02365	2.5E-28	13	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MSEILQMGSS CLPPGFRFHP TDEELIDYYL KRKVEGLEIE LEVIPVIDLY KFDPWELPDK 60 SFLPNRDMEW FFFCSRDKKY PNGFRTNRGT KAGYWKATGK DRKITSRSSS TVGYRKTLVF 120 YKGRALLGDR TTWLMHEYRL CDDESSSQGS QTYKGAYVLC RVSKKNEIKT NSKIRRNLSE 180 QTLGSGESSG YSSRVTSPSR DGTMPFHSFV NPVSTEIDSS NIWISPDFIL DSSKDYPQIQ 240 NFASEYFQDF DFPVIGQEVN FPASILHTDV DQNMDESMQT GYWTNCGYDQ TGLFGYSELS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-49	12	166	17	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-49	12	166	17	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-49	12	166	17	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-49	12	166	17	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-49	12	166	20	169	NAC domain-containing protein 19
3swm_B	3e-49	12	166	20	169	NAC domain-containing protein 19
3swm_C	3e-49	12	166	20	169	NAC domain-containing protein 19
3swm_D	3e-49	12	166	20	169	NAC domain-containing protein 19
3swp_A	3e-49	12	166	20	169	NAC domain-containing protein 19
3swp_B	3e-49	12	166	20	169	NAC domain-containing protein 19
3swp_C	3e-49	12	166	20	169	NAC domain-containing protein 19
3swp_D	3e-49	12	166	20	169	NAC domain-containing protein 19
4dul_A	3e-49	12	166	17	166	NAC domain-containing protein 19
4dul_B	3e-49	12	166	17	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, rosettes leaves, cauline leaves and stems. {ECO:0000269\|PubMed:24285786}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269\|PubMed:24285786, ECO:0000269\|PubMed:25182467}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00546	DAP	Transfer from AT5G46590	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128881.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269\|PubMed:24285786}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128881.1	0.0	PREDICTED: NAC domain-containing protein 86-like
Swissprot	Q9LS24	1e-175	NAC96_ARATH; NAC domain-containing protein 96
TrEMBL	A0A078J7X6	0.0	A0A078J7X6_BRANA; BnaA02g36760D protein
TrEMBL	M4DZU9	0.0	M4DZU9_BRARP; Uncharacterized protein
STRING	Bra022046.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2151	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46590.1	1e-178	NAC domain containing protein 96

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Matsuoka K, et al. Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls. Plant Cell Physiol., 2016. 57(12): p. 2620-2631 [PMID:27986917]