PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128925.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 500aa MW: 54965.8 Da PI: 7.3138

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128925.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	112.5	4.6e-35	47	195	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......... 77 lp+G++F+Ptd+el+ e+L++kv k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ XP_009128925.1 47 LPAGVKFDPTDQELI-EHLEAKVLVKEMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmh 139 799**********.99*99995443233444334666646******.555666799**************87999999999 PP NAM 78 ....tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l XP_009128925.1 140 gsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 195 987666788********.999*******5547999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-37	43	214	IPR003441	NAC domain
PROSITE profile	PS51005	32.236	47	214	IPR003441	NAC domain
Pfam	PF02365	1.8E-15	48	195	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPNWVGLPAG VKFDPTDQEL 60 IEHLEAKVLV KEMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QTECDNSMHG SSSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN 180 RKPEKTNWVM HQYHLGTHEE EREGELVVSK ISYQTQPRQC NWSSSTSSLN AIGGGGGEAN 240 SGGGGEANKM RRGSGTTSGG SCSSSREIMN VNPTNRSDEV GGVGGGAMAV AAAAAAVVAG 300 LPSYAMDQLS FLPFMKSFDE VARRETLHTG QATCDDVMAE QLRHRHQASP SSTSSHHVAH 360 HHHQHHHQQQ QRYHAFNISQ PTHPISTIIS PSTSLHHAPV NILDDNPYRV HRILLPNENY 420 QAHQQQQDQE RDEQHNDGKM GGRSASGLEE LIMGCSSSNT HHDVKDGSSS MGNQQEAEWL 480 KYSTTFWPAP DSSDNQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MNKSNPAGSV TGSDIIDAKI EEHQLCGSNK CPSCGHKLEG KPNWVGLPAG VKFDPTDQEL  60
IEHLEAKVLV KEMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QTECDNSMHG SSSSGETRWH KTGKTRPVMV NGKQKGCKKI LVLYTNFGKN  180
RKPEKTNWVM HQYHLGTHEE EREGELVVSK ISYQTQPRQC NWSSSTSSLN AIGGGGGEAN  240
SGGGGEANKM RRGSGTTSGG SCSSSREIMN VNPTNRSDEV GGVGGGAMAV AAAAAAVVAG  300
LPSYAMDQLS FLPFMKSFDE VARRETLHTG QATCDDVMAE QLRHRHQASP SSTSSHHVAH  360
HHHQHHHQQQ QRYHAFNISQ PTHPISTIIS PSTSLHHAPV NILDDNPYRV HRILLPNENY  420
QAHQQQQDQE RDEQHNDGKM GGRSASGLEE LIMGCSSSNT HHDVKDGSSS MGNQQEAEWL  480
KYSTTFWPAP DSSDNQDHHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128925.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128925.1	0.0	PREDICTED: uncharacterized protein LOC103853758 isoform X2
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3P5Z2Q0	0.0	A0A3P5Z2Q0_BRACM; Uncharacterized protein
STRING	Bo1g016630.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]