PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009128929.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

NAC

Protein Properties

Length: 428aa MW: 47244 Da PI: 7.6665

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009128929.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	83.2	5.2e-26	14	123	34	128
NAM 34 ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..............tksgyWkatgkdkevlskkgelvglkktLvfy..kg 111 i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g XP_009128929.1 14 IEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdnsmhgsssSGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFG 106 444437********.555666799**************87999999999987666788********.999*******5547 PP NAM 112 rapkgektdWvmheyrl 128 +++k+ekt+Wvmh+y+l XP_009128929.1 107 KNRKPEKTNWVMHQYHL 123 999999*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	24.206	1	142	IPR003441	NAC domain
SuperFamily	SSF101941	4.71E-28	4	142	IPR003441	NAC domain
Pfam	PF02365	7.4E-8	25	123	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT GTRKRRKIQT 60 ECDNSMHGSS SSGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK PEKTNWVMHQ 120 YHLGTHEEER EGELVVSKIS YQTQPRQCNW SSSTSSLNAI GGGGGEANSG GGGEANKMRR 180 GSGTTSGGSC SSSREIMNVN PTNRSDEVGG VGGGAMAVAA AAAAVVAGLP SYAMDQLSFL 240 PFMKSFDEVA RRETLHTGQA TCDDVMAEQL RHRHQASPSS TSSHHVAHHH HQHHHQQQQR 300 YHAFNISQPT HPISTIISPS TSLHHAPVNI LDDNPYRVHR ILLPNENYQA HQQQQDQERD 360 EQHNDGKMGG RSASGLEELI MGCSSSNTHH DVKDGSSSMG NQQEAEWLKY STTFWPAPDS 420 SDNQDHHG

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MKSHPLIDEF IPTIEGEDGI CYTHPEKLPG VTRDGLSRHF FHRPSKAYTT GTRKRRKIQT  60
ECDNSMHGSS SSGETRWHKT GKTRPVMVNG KQKGCKKILV LYTNFGKNRK PEKTNWVMHQ  120
YHLGTHEEER EGELVVSKIS YQTQPRQCNW SSSTSSLNAI GGGGGEANSG GGGEANKMRR  180
GSGTTSGGSC SSSREIMNVN PTNRSDEVGG VGGGAMAVAA AAAAVVAGLP SYAMDQLSFL  240
PFMKSFDEVA RRETLHTGQA TCDDVMAEQL RHRHQASPSS TSSHHVAHHH HQHHHQQQQR  300
YHAFNISQPT HPISTIISPS TSLHHAPVNI LDDNPYRVHR ILLPNENYQA HQQQQDQERD  360
EQHNDGKMGG RSASGLEELI MGCSSSNTHH DVKDGSSSMG NQQEAEWLKY STTFWPAPDS  420
SDNQDHHG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269\|PubMed:25265867}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269\|PubMed:25265867, ECO:0000269\|PubMed:25535195}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009128929.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL161574	0.0	AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.
GenBank	CP002687	0.0	CP002687.1 Arabidopsis thaliana chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009128925.1	0.0	PREDICTED: uncharacterized protein LOC103853758 isoform X2
Refseq	XP_009128929.1	0.0	PREDICTED: uncharacterized protein LOC103853758 isoform X3
Swissprot	Q9M0F8	0.0	NAC75_ARATH; NAC domain-containing protein 75
TrEMBL	A0A3P5Z2Q0	0.0	A0A3P5Z2Q0_BRACM; Uncharacterized protein
STRING	Bo1g016630.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29230.1	0.0	NAC domain containing protein 75

Publications ? help Back to Top
Droc G, et al. OryGenesDB: a database for rice reverse genetics. Nucleic Acids Res., 2006. 34(Database issue): p. D736-40 [PMID:16381969] Sakamoto S,Mitsuda N Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant. Plant Cell Physiol., 2015. 56(2): p. 299-310 [PMID:25535195]