PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009128943.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GATA
Protein Properties Length: 471aa    MW: 52332.8 Da    PI: 6.4425
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009128943.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.43.1e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_009128943.1  7 CYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGS 41
                    ****************88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.6E-9155IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.81E-11546No hitNo description
CDDcd002028.21E-17663No hitNo description
PfamPF003205.3E-14741IPR000679Zinc finger, GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-13740IPR013088Zinc finger, NHR/GATA-type
PfamPF139192.2E-6235330IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MGKQGPCYHC GVTSTPLWRN GPPEKPVLCN ACGSRWRTKG SLVNYTPLHA RAEGDEVEIE  60
DRRGGQKMMM INGMSMNRKR KPYQESFTVK RTSLEFSNGF KKRALEEEAS NNRSSSGSVV  120
SNSESCDQSN AWETSFAACK KRTCVGRPKA AASSSVEKLT KDLFSILQEQ QSSCCVSGTS  180
EEELLFENES PMVIGHGSVL LRDPREDSEA SSLLVESSKS SSIHSHNFGG KAIKQEQLKR  240
TKSQVLGRHS LPLCNIDLKY VFNFDEFKEK FTKEEQQTLM KLLPQVDLPD SLLSMFESSQ  300
FKENFSLFQQ LVADGVFGTS TSSSGSKLEE FKTLAKLALS DPDKSHLLES YQMLKDKEIE  360
DSVTTTSRVS NPNTSDNNSL VTIKKPCESL NHNFSETRVV MKSPKEVMKI GSKHIETKEI  420
IENSVSSLNH MSYGGSMVCG GYEDNDNSDQ DLLLDVPSNG SFPQAELLHM I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009128943.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1834950.0AC183495.1 Brassica oleracea Contig A, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009128943.10.0PREDICTED: GATA transcription factor 27
SwissprotQ5PP380.0GAT27_ARATH; GATA transcription factor 27
TrEMBLM4E0100.0M4E010_BRARP; Uncharacterized protein
STRINGBra022107.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16062785
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.10.0GATA transcription factor 27