PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129177.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family G2-like
Protein Properties Length: 200aa    MW: 22530.5 Da    PI: 10.1361
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129177.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.23.8e-333588255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtp+LH++Fv+av+ LGG+++AtPk +l++m+vkgLt++hvkSHLQ+YR 
  XP_009129177.1 35 PRLRWTPDLHRCFVNAVDMLGGQHRATPKLVLKMMDVKGLTISHVKSHLQMYRG 88
                    8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.3353191IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-303188IPR009057Homeodomain-like
SuperFamilySSF466896.63E-153587IPR009057Homeodomain-like
TIGRFAMsTIGR015577.2E-243588IPR006447Myb domain, plants
PfamPF002498.0E-93687IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MGKAAGRNGN ENYNGVGFNG QRGGGVRPYV RSPVPRLRWT PDLHRCFVNA VDMLGGQHRA  60
TPKLVLKMMD VKGLTISHVK SHLQMYRGSK LTLGKPEESS SSSIRRQDTE EDNFHDNLSL  120
HTRNDCLLGF HSFPLSSHSS LRGGRKKEQT SESSGDDDAD ADFLHTMNMK KTKETTMFRS  180
HHFHKICVIS CWGITVWFKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-193690357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.200752e-58bud
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129177.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2295111e-96AK229511.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL17-14-B12.
GenBankBT0085561e-96BT008556.1 Arabidopsis thaliana clone U50358 unknown protein (At2g02060) mRNA, complete cds.
GenBankBT0086991e-96BT008699.1 Arabidopsis thaliana clone RAFL17-14-B12 (R50358) unknown protein (At2g02060) mRNA, complete cds.
GenBankKJ1389241e-96KJ138924.1 Arabidopsis thaliana glycosyltransferase (AT2G02060) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013691812.11e-136putative Myb family transcription factor At1g14600
SwissprotQ700D99e-63MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A398AL641e-148A0A398AL64_BRACM; Uncharacterized protein
STRINGBra026618.1-P1e-135(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.11e-58G2-like family protein