PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129242.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

HD-ZIP

Protein Properties

Length: 198aa MW: 22519.6 Da PI: 9.7132

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129242.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.5	1.2e-18	64	118	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t+eq + Le+ F++n++++ +++e LAk+l L rq+ vWFqNrRa+ k XP_009129242.1 64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSK 118 78889************************************************98 PP
2	HD-ZIP_I/II	119.1	2.3e-38	64	152	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rl++eq++lLE+sF+++++L+p++K++la++L l+prq++vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr + XP_009129242.1 64 RKKLRLTREQSRLLEDSFRQNHTLNPKQKEALAKHLMLRPRQIEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNHRLHREVEELR-A 152 69*************************************************************************************9.4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.69E-18	49	121	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.4E-17	57	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.135	60	120	IPR001356	Homeobox domain
SMART	SM00389	2.4E-17	62	124	IPR001356	Homeobox domain
CDD	cd00086	9.47E-15	63	121	No hit	No description
Pfam	PF00046	6.4E-16	64	118	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	95	118	IPR017970	Homeobox, conserved site
Pfam	PF02183	1.4E-9	120	154	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	3.0E-21	120	163	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MAILPENSSN LDLTISVPGF SSSPPSVSDE GSGGGREQLK LDMNRLPWSE DDEELCHGGS 60 APPRKKLRLT REQSRLLEDS FRQNHTLNPK QKEALAKHLM LRPRQIEVWF QNRRARSKLK 120 QTEMECEYLK RWFGSLTEQN HRLHREVEEL RAMKVAPSTV TSTSSLTMCP RCERVTTAAS 180 PSMAASAKKA LPLKEREH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	112	120	RRARSKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129242.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK353448	0.0	AK353448.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-26-G16.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009129242.1	1e-145	PREDICTED: homeobox-leucine zipper protein ATHB-17-like isoform X1
Swissprot	Q8S9N6	1e-118	ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17
TrEMBL	A0A398AE54	1e-143	A0A398AE54_BRACM; Uncharacterized protein
STRING	A0A087GU16	1e-127	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4890	27	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01430.1	2e-96	homeobox-leucine zipper protein 17

Publications ? help Back to Top
Zhao P, et al. ATHB17 enhances stress tolerance by coordinating photosynthesis associated nuclear gene and ATSIG5 expression in response to abiotic stress. Sci Rep, 2017. 7: p. 45492 [PMID:28358040]