PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_009129262.1

Organism

Brassica rapa

Taxonomic ID

3711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 16956.7 Da PI: 10.5173

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_009129262.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.2	6.7e-21	26	69	2	45
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + +n+ rq tf kR+ngilKKA+ELS+LCd++ ++++fs++gk XP_009129262.1 26 KLDNTKGRQATFGKRKNGILKKAHELSILCDIDLLLLMFSPSGK 69 578999************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	22.315	17	69	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.5E-26	17	76	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	8.76E-22	18	82	IPR002100	Transcription factor, MADS-box
CDD	cd00120	4.27E-14	19	76	No hit	No description
PRINTS	PR00404	1.8E-17	19	39	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.6E-19	28	70	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-17	39	54	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.8E-17	54	75	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MVSIRLAFEF ASLGNRIERV KLKIKKLDNT KGRQATFGKR KNGILKKAHE LSILCDIDLL 60 LLMFSPSGKP SMLWYTKIAQ RLLFWVKKPS SSYVLSWWQT FNVVVHETSL FDELTTSNGA 120 MKPQTNSQQQ FCNNSISIYN PNVQNGLE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_009129262.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004138	6e-52	AC004138.3 Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence.
GenBank	CP002685	6e-52	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03060.1	2e-15	AGAMOUS-like 30