PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009129548.1
Organism
Brassica rapa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NAC
Protein Properties Length: 344aa    MW: 39313.6 Da    PI: 5.6386
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009129548.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.85.4e-50101521129
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....lelee...........vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk 79 
                     lppGfrFhP+deelv++yL++k+++k          +            + e+d++++ePw+Lp  +k + kewyfFs rd+kyatg r+nrat 
  XP_009129548.1  10 LPPGFRFHPSDEELVCHYLCNKIRAKYdqgdvE---DddadealngatDLVEIDLHTCEPWQLPDVAKLNAKEWYFFSFRDRKYATGYRTNRATI 101
                     79**********************999665540...145666777764699*************87788999*********************** PP

             NAM  80 sgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                     sgyWkatgkd++v++  +++lvg++ktLvfy++rap+g kt+W+mhe+rle
  XP_009129548.1 102 SGYWKATGKDRTVMDPrTSQLVGMRKTLVFYRNRAPNGIKTTWIMHEFRLE 152
                     ***************967888***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-568170IPR003441NAC domain
PROSITE profilePS5100554.09310170IPR003441NAC domain
PfamPF023651.3E-2611151IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MGLKDIGSRL PPGFRFHPSD EELVCHYLCN KIRAKYDQGD VEDDDADEAL NGATDLVEID  60
LHTCEPWQLP DVAKLNAKEW YFFSFRDRKY ATGYRTNRAT ISGYWKATGK DRTVMDPRTS  120
QLVGMRKTLV FYRNRAPNGI KTTWIMHEFR LECPNMPPKE DWVLCRVFNK GRDSTLQDTN  180
NEHQTQRFEV NDAPDLNYNN QSQPLLLSPP SNTIDPPHHH DQWEQLIKQP SRSTDHPYHH  240
NCQHQTVACG WEQMMIGSMS SSSSHGPDHE SLLNLLYADN KNSVNITDDN YGHNYGKILL  300
SSDITSLDHD KTCMASSSDG GMVSDLHMEC GGLSFETENL LAFQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-451017017165NO APICAL MERISTEM PROTEIN
1ut4_B3e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_A3e-451017017165NO APICAL MERISTEM PROTEIN
1ut7_B3e-451017017165NO APICAL MERISTEM PROTEIN
4dul_A3e-451017017165NAC domain-containing protein 19
4dul_B3e-451017017165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_009129548.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382730.0KF738273.1 Brassica napus NAC transcription factor 74-1 (NAC74-1.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009129548.10.0PREDICTED: NAC domain-containing protein 21/22
RefseqXP_013696901.10.0NAC domain-containing protein 21/22
TrEMBLA0A398ARN40.0A0A398ARN4_BRACM; Uncharacterized protein
TrEMBLM4D3I30.0M4D3I3_BRARP; Uncharacterized protein
STRINGBra011037.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34362862
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.10.0NAC domain containing protein 74